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sourmash-oddify: a workflow for exploring contamination in metagenome-assembled genomes

ivory.idyll.org · published 1 January 2020

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Host
https://www.nature.com/articles/sdata2017203
nature.com
https://www.nature.com/articles/s41564-018-0176-9
nature.com
https://sourmash.readthedocs.io/en/latest/command-line.html
sourmash.readthedocs.io
https://genome.cshlp.org/content/early/2015/05/14/gr.186072.114
genome.cshlp.org
https://www.biorxiv.org/content/10.1101/462788v2
biorxiv.org
https://snakemake.readthedocs.io/
snakemake.readthedocs.io
https://github.com/dib-lab/sourmash-oddify
github.com
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btz848/5626182
academic.oup.com
https://github.com/dib-lab/sourmash-oddify/blob/master/scripts/find-oddities.py
github.com
https://github.com/dib-lab/sourmash-oddify/blob/master/scripts/find-oddities-examine.py
github.com
https://github.com/dib-lab/sourmash-oddify/blob/master/conf/default.yml
github.com
https://github.com/dib-lab/sourmash-oddify/blob/master/conf/config-tara.yml
github.com
https://osf.io/xj87f/
osf.io
https://osf.io/rt6qm/
osf.io
https://osf.io/xqt3n/
osf.io
https://osf.io/jhq62/
osf.io
https://github.com/tseemann/prokka
github.com
https://osf.io/uds2n/
osf.io
https://blast.ncbi.nlm.nih.gov/Blast.cgi
blast.ncbi.nlm.nih.gov
https://www.ncbi.nlm.nih.gov/biosample/SAMN07618765
ncbi.nlm.nih.gov
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