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Comparing two genome binnings quickly with sourmash

ivory.idyll.org · published 22 July 2019

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Links from this post

Link
Host
http://sourmash.rtfd.io
sourmash.rtfd.io
https://github.com/bxlab/metaWRAP
github.com
https://github.com/ctb/2017-sourmash-cluster/blob/6ea9e2161fe72e6b7e4865070b66ac02a3dec373/species-clustering.ipynb
github.com
https://github.com/ctb/2017-sourmash-cluster/blob/afdde27619c36432ee5426c8032e2a785bc57755/cocluster.py
github.com
https://github.com/ctb/2017-sourmash-cluster/commit/114fabc0275e4f9deb55bfb0e4add3bd5860035b
github.com
https://sourmash.readthedocs.io/en/latest/using-sourmash-a-guide.html
sourmash.readthedocs.io
https://github.com/ctb/2017-sourmash-cluster/blob/1b8095722c890f3a43cd50ad40ab1da5717fb2c3/cocluster.py
github.com
https://www.ncbi.nlm.nih.gov/pubmed/23387867
ncbi.nlm.nih.gov
https://www.biorxiv.org/content/10.1101/155358v3
biorxiv.org
https://github.com/ctb/2017-sourmash-cluster/blob/master/podar-coclust/podar.coclust.csv
github.com
https://github.com/ctb/2017-sourmash-cluster/blob/master/podar-coclust/podar.coclust.log
github.com
https://github.com/ctb/2017-sourmash-cluster/blob/master/podar-coclust/podar.coclust.txt
github.com
https://github.com/ctb/2017-sourmash-cluster/blob/master/podar-coclust/Snakefile
github.com
https://github.com/ctb/2019-tara-binning2/blob/master/Snakefile
github.com
https://github.com/ctb/2019-tara-binning2/
github.com
https://github.com/ctb/2017-sourmash-cluster/tree/master/podar-coclust
github.com
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