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Downloading and Preprocessing Medical Images in Bulk: DICOM to NumPy with Python

glassboxmedicine.com · published 16 February 2021

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https://www.sciencedirect.com/science/article/abs/pii/S1361841520302218
sciencedirect.com
https://arxiv.org/ftp/arxiv/papers/2002/2002.04752.pdf
arxiv.org
https://github.com/rachellea/ct-volume-preprocessing
github.com
Best Use of Train/Val/Test Splits, with Tips for Medical Data Read at the source ↗
glassboxmedicine.com
https://commons.wikimedia.org/wiki/File:Computed_tomography_of_human_brain_-_large.png
commons.wikimedia.org
https://commons.wikimedia.org/wiki/Scrollable_computed_tomography_images_of_a_normal_abdomen_and_pelvis
commons.wikimedia.org
https://pubmed.ncbi.nlm.nih.gov/30035154/
pubmed.ncbi.nlm.nih.gov
https://physionet.org/content/mimic-cxr/2.0.0/
physionet.org
Automated Chest X-Ray Interpretation Read at the source ↗
glassboxmedicine.com
https://pubmed.ncbi.nlm.nih.gov/27281255/
pubmed.ncbi.nlm.nih.gov
https://stanfordmlgroup.github.io/competitions/chexpert/
stanfordmlgroup.github.io
https://www.radiologyinfo.org/en/pdf/safety-contrast.pdf
radiologyinfo.org
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3878741/
ncbi.nlm.nih.gov
https://pubmed.ncbi.nlm.nih.gov/15371604/
pubmed.ncbi.nlm.nih.gov
https://pubmed.ncbi.nlm.nih.gov/24010394/
pubmed.ncbi.nlm.nih.gov
https://dicom.innolitics.com/ciods/cr-image/general-image/00080008
dicom.innolitics.com
https://dicom.innolitics.com/ciods/ct-image/image-plane/00200037
dicom.innolitics.com
https://dicom.innolitics.com/ciods/ct-image/image-plane/00200032
dicom.innolitics.com
https://dicom.innolitics.com/ciods/ct-image/ct-image/00281052
dicom.innolitics.com
https://dicom.innolitics.com/ciods/ct-image/ct-image/00281053
dicom.innolitics.com
https://dicom.innolitics.com/ciods/ct-image/image-plane/00280030
dicom.innolitics.com
https://dicom.innolitics.com/ciods/ct-image/ct-image/00181120
dicom.innolitics.com
https://en.wikipedia.org/wiki/Vendor_Neutral_Archive
en.wikipedia.org
https://github.com/rachellea/ct-volume-preprocessing/blob/master/download_volumes.py
github.com
https://en.wikipedia.org/wiki/High-resolution_computed_tomography
en.wikipedia.org
https://en.wikipedia.org/wiki/Anatomical_plane
en.wikipedia.org
https://commons.wikimedia.org/wiki/File:Human_body_schemes.png
commons.wikimedia.org
https://github.com/rachellea/ct-volume-preprocessing/blob/master/dicom_numpy/combine_slices.py
github.com
https://github.com/innolitics/dicom-numpy
github.com
https://radiopaedia.org/articles/hounsfield-unit?lang=us
radiopaedia.org
https://pubmed.ncbi.nlm.nih.gov/25341139/
pubmed.ncbi.nlm.nih.gov
https://github.com/rachellea/ct-volume-preprocessing/blob/master/preprocess_volumes.py
github.com
https://commons.wikimedia.org/wiki/Scrollable_high-resolution_computed_tomography_images_of_a_normal_thorax
commons.wikimedia.org