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Reproducibility vs. usability

Bits of DNA | Reviews and commentary on computational biology by Lior Pachter · published 18 March 2014

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http://reproducibility.cs.arizona.edu

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http://www.nature.com/nature/focus/reproducibility/

nature.com

http://www.ploscollections.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003285;jsessionid=19DD6FADBDE5A23504BF6011C3A6FC77

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The network nonsense of Manolis Kellis Read at the source ↗

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http://www.nature.com/nbt/journal/v31/n8/abs/nbt.2635.html

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http://en.wikipedia.org/wiki/Borda_count

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http://math.berkeley.edu/~nbray/

math.berkeley.edu

http://compbio.mit.edu/nd/try_it_out.html

compbio.mit.edu

https://liorpachter.wordpress.com/wp-content/uploads/2014/03/figure1_dream_nd.jpg

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https://liorpachter.wordpress.com/wp-content/uploads/2014/03/reverse_params.png

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http://en.wikipedia.org/wiki/Receiver_operating_characteristic

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Magnitude of effect vs. statistical significance Read at the source ↗

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https://liorpachter.wordpress.com/wp-content/uploads/2014/03/auroc_nd_proteinparams.png

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https://liorpachter.wordpress.com/wp-content/uploads/2014/03/aupr_nd_proteinparams.png

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http://www.nature.com/nmeth/journal/v9/n8/abs/nmeth.2016.html

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https://liorpachter.wordpress.com/wp-content/uploads/2014/03/nd_dream5_final.png

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