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Near-optimal RNA-Seq quantification with kallisto

Bits of DNA | Reviews and commentary on computational biology by Lior Pachter · published 11 May 2015

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http://arxiv.org/abs/1505.02710

arxiv.org

http://pachterlab.github.io/kallisto/

pachterlab.github.io

http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3519.html

nature.com

Sailfish Read at the source ↗

liorpachter.wordpress.com

http://www.cs.cmu.edu/~ckingsf/software/sailfish/

cs.cmu.edu

http://www.nature.com/nbt/journal/v32/n5/abs/nbt.2862.html

nature.com

http://deweylab.biostat.wisc.edu/rsem/

deweylab.biostat.wisc.edu

http://www.almob.org/content/6/1/9

almob.org

https://notendur.hi.is/pmelsted/

notendur.hi.is

http://www.biomedcentral.com/1471-2105/12/333

biomedcentral.com

https://pmelsted.wordpress.com/2014/01/17/edge-cases-in-de-bruijn-graphs/

pmelsted.wordpress.com

http://www.cs.berkeley.edu/~pimentel/

cs.berkeley.edu

https://innovativegenomics.org

innovativegenomics.org

http://www.geuvadis.org/web/geuvadis;jsessionid=BE8F5F5BDAACC5BD899E7573088A4F8B

geuvadis.org

https://liorpachter.wordpress.com/wp-content/uploads/2015/05/screenshot_kallisto2.jpg

liorpachter.wordpress.com

https://liorpachter.wordpress.com/wp-content/uploads/2015/05/rainbow1.jpg

liorpachter.wordpress.com

https://liorpachter.wordpress.com/wp-content/uploads/2015/05/rainbow.jpg

liorpachter.wordpress.com