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Fast and accurate gene differential expression by testing transcript compatibility counts

Bits of DNA | Reviews and commentary on computational biology by Lior Pachter · published 7 January 2019

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https://www.biorxiv.org/content/early/2018/12/19/501106
biorxiv.org
https://liorpachter.wordpress.com/2018/02/15/gde²-dge²-dtu²-dte₁²-dte₂²/
liorpachter.wordpress.com
https://www.biorxiv.org/content/early/2018/02/14/258566
biorxiv.org
https://almob.biomedcentral.com/articles/10.1186/1748-7188-6-9
almob.biomedcentral.com
https://pachterlab.github.io/kallisto/
pachterlab.github.io
https://www.nature.com/articles/nbt.3519
nature.com
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0970-8
genomebiology.biomedcentral.com
https://genome.cshlp.org/content/22/10/2008
genome.cshlp.org
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1419-z
genomebiology.biomedcentral.com
https://github.com/lakigigar/BitsofDNA/tree/master/GDE_by_TCC
github.com
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0017820
journals.plos.org
https://liorpachter.wordpress.com/2019/01/07/fast-and-accurate-gene-differential-expression-by-testing-transcript-compatibility-counts/supp1_oshlack/
liorpachter.wordpress.com
https://liorpachter.wordpress.com/2019/01/07/fast-and-accurate-gene-differential-expression-by-testing-transcript-compatibility-counts/supplementaryfigure1/
liorpachter.wordpress.com
https://liorpachter.wordpress.com/2019/01/07/fast-and-accurate-gene-differential-expression-by-testing-transcript-compatibility-counts/supp2_oshlack/
liorpachter.wordpress.com
https://liorpachter.wordpress.com/2019/01/07/fast-and-accurate-gene-differential-expression-by-testing-transcript-compatibility-counts/supplementaryfigure2/
liorpachter.wordpress.com
https://liorpachter.wordpress.com/2019/01/07/fast-and-accurate-gene-differential-expression-by-testing-transcript-compatibility-counts/supp3_oshlack/
liorpachter.wordpress.com
https://liorpachter.wordpress.com/2019/01/07/fast-and-accurate-gene-differential-expression-by-testing-transcript-compatibility-counts/supplementaryfigure3/
liorpachter.wordpress.com
https://liorpachter.wordpress.com/2019/01/07/fast-and-accurate-gene-differential-expression-by-testing-transcript-compatibility-counts/supp4_oshlack/
liorpachter.wordpress.com
https://liorpachter.wordpress.com/2019/01/07/fast-and-accurate-gene-differential-expression-by-testing-transcript-compatibility-counts/supplementaryfigure4/
liorpachter.wordpress.com
https://liorpachter.wordpress.com/2019/01/07/fast-and-accurate-gene-differential-expression-by-testing-transcript-compatibility-counts/supp5_oshlack/
liorpachter.wordpress.com
https://liorpachter.wordpress.com/2019/01/07/fast-and-accurate-gene-differential-expression-by-testing-transcript-compatibility-counts/supplementaryfigure5/
liorpachter.wordpress.com
How not to perform a differential expression analysis (or science) Read at the source ↗
liorpachter.wordpress.com
https://www.biorxiv.org/content/early/2018/11/18/472571
biorxiv.org
https://github.com/BUStools/BUS_notebooks_python/blob/master/dataset-notebooks/10x_t4k_TCC/bus2tcc-gene.ipynb
github.com