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Computational lab notebooks using git and git-annex

tenderisthebyte.com · published 7 May 2021

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Link
Host
https://github.com/mooreryan/computational_lab_notebooks
github.com
https://mooreryan.github.io/computational_lab_notebooks/
mooreryan.github.io
https://doi.org/10.1371/journal.pcbi.1004385
doi.org
https://ori.hhs.gov/education/products/wsu/data.html
ori.hhs.gov
https://scicomp.stackexchange.com/questions/35854/lab-notebooks-for-computational-science
scicomp.stackexchange.com
https://blog.addgene.org/how-to-keep-a-lab-notebook-for-bioinformatic-analyses
blog.addgene.org
https://www.reddit.com/r/labrats/comments/66dlgq/keeping_a_good_lab_notebook_in_a_computational/
reddit.com
https://www.markdownguide.org/getting-started/
markdownguide.org
https://tiddlywiki.com/
tiddlywiki.com
https://rmarkdown.rstudio.com/
rmarkdown.rstudio.com
https://jupyter.org/
jupyter.org
https://doi.org/10.1038/s41587-019-0209-9
doi.org
https://docs.qiime2.org/2021.2/concepts/
docs.qiime2.org
git
git-scm.com
https://git-scm.com/doc
git-scm.com
https://mooreryan.github.io/computational_lab_notebooks/git/
mooreryan.github.io
https://stackoverflow.com/questions/3055506/git-is-very-very-slow-when-tracking-large-binary-files
stackoverflow.com
https://git-lfs.github.com/
git-lfs.github.com
https://git-annex.branchable.com/
git-annex.branchable.com
https://en.wikipedia.org/wiki/Symbolic_link
en.wikipedia.org
https://git-annex.branchable.com/walkthrough/
git-annex.branchable.com
http://ivory.idyll.org/blog/is-version-control-an-electronic-lab-notebook.html
ivory.idyll.org
https://kbroman.org/blog/2013/08/20/electronic-lab-notebook/
kbroman.org
https://yossadh.github.io/posts/2018/12/lab-notebook-part-2/
yossadh.github.io
https://en.wikipedia.org/wiki/Schema_migration
en.wikipedia.org
https://guides.rubyonrails.org/active_record_migrations.html
guides.rubyonrails.org
https://mooreryan.github.io/computational_lab_notebooks/usage/
mooreryan.github.io
https://www.ruby-lang.org/en/
ruby-lang.org
https://git-scm.com/docs/git-commit/2.10.5
git-scm.com
https://en.wikipedia.org/wiki/Dry_run_(testing
en.wikipedia.org
https://git-scm.com/docs/gitk/
git-scm.com