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Implementing a High Performance Sequence Aligner in C++

owolabioromidayo.github.io · published 8 February 2026

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https://github.com/owolabioromidayo/bwa/
github.com
https://en.wikipedia.org/wiki/Needleman%E2%80%93Wunsch_algorithm
en.wikipedia.org
https://en.wikipedia.org/wiki/Smith%E2%80%93Waterman_algorithm
en.wikipedia.org
https://en.wikipedia.org/wiki/Burrows%E2%80%93Wheeler_transform
en.wikipedia.org
https://en.wikipedia.org/wiki/FM-index
en.wikipedia.org
https://www.youtube.com/watch?v=kvVGj5V65io
youtube.com
https://www.researchgate.net/profile/Daricks-Wai-Hong-Chan/publication/221577802_Linear_Suffix_Array_Construction_by_Almost_Pure_Induced-Sorting/links/00b495318a21ba484f000000/Linear-Suffix-Array-Construction-by-Almost-Pure-Induced-Sorting.pdf
researchgate.net
https://people.unipmn.it/manzini/papers/focs00draft.pdf
people.unipmn.it
https://cs.carleton.edu/cs_comps/2324/sequenceAlignment/final-results/BWTFinalPaper23.pdf
cs.carleton.edu
https://web.stanford.edu/class/cs262/archives/presentations/lecture4.pdf
web.stanford.edu