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Assessing the utility of data visualizations based on dimensionality reduction

mbernste.github.io · published 2 March 2024

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https://en.wikipedia.org/wiki/Dimensionality_reduction
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https://en.wikipedia.org/wiki/Principal_component_analysis
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https://arxiv.org/pdf/1802.03426.pdf
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https://en.wikipedia.org/wiki/Nonlinear_dimensionality_reduction
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https://en.wikipedia.org/wiki/Single-cell_sequencing
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https://scanpy.readthedocs.io/en/latest/generated/scanpy.datasets.pbmc3k.html
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https://colab.research.google.com/drive/1g4bt9S0aE6qu8BZNvVblKNqIZf-UK62L?usp=sharing
colab.research.google.com
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011288
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https://doi.org/10.1126/science.abl4896
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https://en.wikipedia.org/wiki/Gene_isoform
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https://mbernste.github.io/posts/vector_spaces/
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https://mbernste.github.io/posts/intrinsic_dimensionality/
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https://en.wikipedia.org/wiki/Map_projection
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https://en.wikipedia.org/wiki/Inverse_function
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https://en.wikipedia.org/wiki/Deterministic_system
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https://en.wikipedia.org/wiki/Frequentist_probability
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https://en.wikipedia.org/wiki/Bayesian_probability
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https://umap-learn.readthedocs.io/en/latest/
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https://doi.org/10.1038/s41587-019-0336-3
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https://doi.org/10.1038/s41587-020-00801-7
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https://doi.org/10.1038/s41467-024-45891-y
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https://doi.org/10.1016/j.isci.2020.101913
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https://doi.org/10.1016/j.xpro.2021.100705
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https://doi.org/10.1371/journal.pcbi.1011288
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https://doi.org/10.1038/s42003-022-03628-x
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https://en.wikipedia.org/wiki/Cellular_differentiation
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https://en.wikipedia.org/wiki/Myeloid_tissue
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https://doi.org/10.1016/j.cell.2015.11.013
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https://doi.org/10.1371/journal.pone.0098679
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https://en.wikipedia.org/wiki/Nearest_neighbor_graph
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https://scanpy.readthedocs.io/en/stable/generated/scanpy.datasets.paul15.html
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