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What we can learn from evolving proteins

liambai.com · published 12 September 2023

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https://en.wikipedia.org/wiki/Amino_acid
en.wikipedia.org
https://en.wikipedia.org/wiki/Sequence_space_(evolution
en.wikipedia.org
https://evolution.berkeley.edu/evolution-101/mechanisms-the-processes-of-evolution/evolutionary-fitness/
evolution.berkeley.edu
https://youtu.be/hcJS9d09ECA?si=DXLsnOvbJH7wwrJ1
youtu.be
https://www.forbes.com/sites/robtoews/2021/10/03/alphafold-is-the-most-important-achievement-in-ai-ever/?sh=6e0571586e0a
forbes.com
https://en.wikipedia.org/wiki/Sequence_logo
en.wikipedia.org
https://weblogo.berkeley.edu/logo.cgi
weblogo.berkeley.edu
https://evcouplings.org/
evcouplings.org
https://en.wikipedia.org/wiki/Hamiltonian_(quantum_mechanics
en.wikipedia.org
https://en.wikipedia.org/wiki/Statistical_mechanics
en.wikipedia.org
https://en.wikipedia.org/wiki/Mean-field_theory
en.wikipedia.org
https://en.wikipedia.org/wiki/Exponential_family
en.wikipedia.org
https://rootsofprogress.org/alphafold-protein-folding-explainer
rootsofprogress.org
https://www.nature.com/articles/s41586-021-03819-2
nature.com
AlphaFold2 @ CASP14: “It feels like one’s child has left home.” Read at the source ↗
moalquraishi.wordpress.com
https://en.wikipedia.org/wiki/Information_content
en.wikipedia.org
https://en.wikipedia.org/wiki/Information_theory
en.wikipedia.org
https://www.quantamagazine.org/how-claude-shannons-information-theory-invented-the-future-20201222/
quantamagazine.org
https://en.wikipedia.org/wiki/Simulated_annealing
en.wikipedia.org
https://en.wikipedia.org/wiki/Root-mean-square_deviation_of_atomic_positions
en.wikipedia.org
https://en.wikipedia.org/wiki/Saturation_mutagenesis
en.wikipedia.org
https://en.wikipedia.org/wiki/High-throughput_screening
en.wikipedia.org
https://www.nature.com/articles/nbt.3769
nature.com
https://marks.hms.harvard.edu/evmutation/
marks.hms.harvard.edu
https://en.wikipedia.org/wiki/Metropolis%E2%80%93Hastings_algorithm
en.wikipedia.org
https://en.wikipedia.org/wiki/Markov_chain_Monte_Carlo
en.wikipedia.org
https://www.science.org/doi/10.1126/science.aba3304
science.org
https://en.wikipedia.org/wiki/DNA_synthesis
en.wikipedia.org
https://www.nature.com/articles/s41592-019-0598-1
nature.com
https://github.com/facebookresearch/esm
github.com
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0028766
journals.plos.org
https://elifesciences.org/articles/02030
elifesciences.org
https://pubmed.ncbi.nlm.nih.gov/31328041/
pubmed.ncbi.nlm.nih.gov
https://en.wikipedia.org/wiki/Side_chain
en.wikipedia.org
https://www.pnas.org/doi/10.1073/pnas.1111471108
pnas.org
https://arxiv.org/abs/1706.03762
arxiv.org
https://arxiv.org/abs/1912.12180
arxiv.org
https://proceedings.mlr.press/v139/rao21a.html
proceedings.mlr.press
https://www.pnas.org/doi/full/10.1073/pnas.2016239118
pnas.org