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How to represent a protein sequence

liambai.com · published 29 September 2023

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https://ourworldindata.org/grapher/cost-of-sequencing-a-full-human-genome
ourworldindata.org
https://en.wikipedia.org/wiki/Regression_analysis
en.wikipedia.org
https://www.nature.com/articles/nature19946
nature.com
Protein Linguistics Read at the source ↗
moalquraishi.wordpress.com
https://en.wikipedia.org/wiki/Feature_learning
en.wikipedia.org
https://github.com/openai/tiktoken
github.com
https://en.wikipedia.org/wiki/Word2vec
en.wikipedia.org
https://en.wikipedia.org/wiki/One-hot
en.wikipedia.org
https://youtu.be/VMj-3S1tku0?si=jd52N4a0ZpWQNUQy
youtu.be
https://www.nature.com/articles/s41592-019-0598-1
nature.com
https://en.wikipedia.org/wiki/Long_short-term_memory
en.wikipedia.org
https://en.wikipedia.org/wiki/BERT_(language_model
en.wikipedia.org
http://jalammar.github.io/illustrated-transformer/
jalammar.github.io
https://twitter.com/rasbt/status/1629884953965068288
twitter.com
https://kazemnejad.com/blog/transformer_architecture_positional_encoding/
kazemnejad.com
https://arxiv.org/abs/1607.06450
arxiv.org
https://github.com/facebookresearch/esm
github.com
https://www.pnas.org/doi/full/10.1073/pnas.2016239118
pnas.org
https://www.biorxiv.org/content/10.1101/2020.12.15.422761v1
biorxiv.org
https://arep.med.harvard.edu/gmc/
arep.med.harvard.edu
https://www.uniprot.org/help/uniref
uniprot.org
https://en.wikipedia.org/wiki/In_silico
en.wikipedia.org
https://en.wikipedia.org/wiki/Sequence_space_(evolution
en.wikipedia.org
https://en.wikipedia.org/wiki/Principal_component_analysis
en.wikipedia.org
https://en.wikipedia.org/wiki/T-distributed_stochastic_neighbor_embedding
en.wikipedia.org
https://en.wikipedia.org/wiki/Protein_secondary_structure
en.wikipedia.org
https://en.wikipedia.org/wiki/Lac_repressor
en.wikipedia.org
https://en.wikipedia.org/wiki/Binding_site
en.wikipedia.org
https://openseq.org/
openseq.org
http://jalammar.github.io/illustrated-bert/
jalammar.github.io
The Future of Protein Science will not be Supervised Read at the source ↗
moalquraishi.wordpress.com
https://arxiv.org/abs/1810.04805
arxiv.org
https://arxiv.org/abs/1706.03762
arxiv.org
https://www.nature.com/articles/s41592-021-01100-y
nature.com
https://arxiv.org/abs/2006.15222
arxiv.org