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Short RNA-seq read alignment with minimap2

lh3.github.io · published 18 April 2025

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https://github.com/lh3/minimap2

github.com

https://github.com/lh3/minimap2/releases/tag/v2.29

github.com

https://github.com/alexdobin/STAR

github.com

https://genome.ucsc.edu/FAQ/FAQformat.html

genome.ucsc.edu

https://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data_RNAseq/AshkenazimTrio/HG002_NA24385_son/Google_Illumina/mRNA/reads/

ftp-trace.ncbi.nlm.nih.gov

https://github.com/lh3/minipileup

github.com

https://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/analysis/NIST_HG002_DraftBenchmark_defrabbV0.019-20241113/

ftp-trace.ncbi.nlm.nih.gov

https://smaht-dac.github.io/pipelines-docs/DOCS/ANALYSIS/Short-Read_RNA-seq_Paired-End/1_Alignment.html

smaht-dac.github.io

https://github.com/biod/sambamba

github.com

https://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data_RNAseq/AshkenazimTrio/HG002_NA24385_son/Google_Illumina/mRNA/alignments/

ftp-trace.ncbi.nlm.nih.gov