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Software and workflow development practices (April 2020 update)

ivory.idyll.org · published 19 April 2020

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https://github.com/ctb/2020-long-read-assembly-decontam
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https://github.com/ctb/2020-long-read-assembly-decontam/blob/master/environment.yml
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https://github.com/ctb/2020-long-read-assembly-decontam/blob/master/conf/env-sourmash.yml
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https://github.com/ctb/2020-long-read-assembly-decontam/blob/master/Snakefile
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https://dib-lab.github.io/dammit/
dib-lab.github.io
https://github.com/spacegraphcats/spacegraphcats/
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https://github.com/dib-lab/elvers
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https://github.com/ctb/2020-long-read-assembly-decontam/blob/master/test-data/conf.yml
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https://github.com/ctb/2020-long-read-assembly-decontam/blob/master/conf/conf-necator.yml
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https://github.com/ctb/2020-long-read-assembly-decontam/blob/master/README.md
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https://github.com/dib-lab/khmer/
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https://github.com/dib-lab/screed/
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https://github.com/dib-lab/sourmash/
github.com
https://github.com/dib-lab/sourmash/tree/master/tests
github.com
http://www.camillescott.org/2017/11/15/pytest-magic/
camillescott.org
https://www.linusakesson.net/programming/kernighans-lever/index.php
linusakesson.net
https://guides.github.com/introduction/flow/
guides.github.com
https://semver.org/
semver.org
https://github.com/dib-lab/sourmash/pull/942
github.com
https://github.com/dib-lab/sourmash/issues/655
github.com
https://github.com/dib-lab/sourmash/pull/946
github.com
https://wiki.c2.com/?PrematureOptimization
wiki.c2.com
https://github.com/dib-lab/sourmash/issues/573
github.com
https://twitter.com/olgabot
twitter.com
https://github.com/dib-lab/sourmash/pull/925
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https://github.com/spacegraphcats/spacegraphcats/blob/master/environment.yml
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https://github.com/dib-lab/sourmash/issues
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https://twitter.com/ctitusbrown/status/1247524069596991488
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