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curiouscoding.nl · published 14 April 2022

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Static search trees: 40x faster than binary search Read at the source ↗
curiouscoding.nl
https://www.youtube.com/watch?v=B9--hyQhka8
youtube.com
https://github.com/RagnarGrootKoerkamp/static-search-tree
github.com
One Billion Row Challenge Read at the source ↗
curiouscoding.nl
https://github.com/RagnarGrootKoerkamp/1brc
github.com
A History of Pairwise Alignment Read at the source ↗
curiouscoding.nl
Low Density Minimizers Read at the source ↗
curiouscoding.nl
SimdSketch: a fast bucket sketch Read at the source ↗
curiouscoding.nl
https://github.com/RagnarGrootKoerkamp/simd-sketch
github.com
https://curiouscoding.nl/papers/sassy2-preprint.pdf
curiouscoding.nl
https://doi.org/10.64898/2026.03.10.710811
doi.org
https://github.com/ragnargrootkoerkamp/sassy
github.com
https://curiouscoding.nl/papers/mim-preprint.pdf
curiouscoding.nl
https://doi.org/10.1101/2025.11.24.690271
doi.org
https://github.com/COMBINE-lab/mim
github.com
https://doi.org/10.1101/2025.06.09.658732
doi.org
https://github.com/bede/deacon
github.com
https://curiouscoding.nl/papers/simdquickheap.pdf
curiouscoding.nl
https://doi.org/10.48550/ARXIV.2604.25681
doi.org
https://github.com/ragnargrootkoerkamp/quickheap
github.com
https://doi.org/10.4230/LIPIcs.ESA.2026.16
doi.org
https://curiouscoding.nl/papers/nonminimal-kphf.pdf
curiouscoding.nl
https://doi.org/10.48550/arXiv.2607.07257
doi.org
https://github.com/ragnargrootkoerkamp/static-hash-sets
github.com
https://doi.org/10.4230/LIPIcs.ESA.2026.20
doi.org
https://curiouscoding.nl/papers/nlglgn-anchored-edit-dist.pdf
curiouscoding.nl
https://doi.org/10.48550/arXiv.2606.03929
doi.org
https://doi.org/10.4230/LIPIcs.WABI.2026.13
doi.org
https://curiouscoding.nl/papers/sus-anchor.pdf
curiouscoding.nl
https://doi.org/10.48550/arXiv.2606.01190
doi.org
https://doi.org/10.4230/LIPIcs.WABI.2026.22
doi.org
https://curiouscoding.nl/papers/stpd.pdf
curiouscoding.nl
https://arxiv.org/abs/2506.14734
arxiv.org
https://github.com/regindex/STPD-index
github.com
https://doi.org/10.4230/LIPIcs.ICALP.2026.24
doi.org
https://curiouscoding.nl/papers/quadrank.pdf
curiouscoding.nl
https://doi.org/10.48550/ARXIV.2602.04103
doi.org
https://github.com/ragnargrootkoerkamp/quadrank
github.com
https://doi.org/10.4230/LIPIcs.SEA.2026.20
doi.org
https://curiouscoding.nl/papers/barbell.pdf
curiouscoding.nl
https://doi.org/10.1101/2025.10.22.683865
doi.org
https://github.com/rickbeeloo/barbell
github.com
https://doi.org/10.1093/bioinformatics/btag349
doi.org
https://curiouscoding.nl/papers/sassy.pdf
curiouscoding.nl
https://doi.org/10.1101/2025.07.22.666207
doi.org
https://doi.org/10.1093/bioinformatics/btag244
doi.org
https://curiouscoding.nl/thesis.pdf
curiouscoding.nl
https://curiouscoding.nl/categories/thesis
curiouscoding.nl
https://doi.org/10.3929/ETHZ-C-000783091
doi.org
https://curiouscoding.nl/papers/ptrhash.pdf
curiouscoding.nl
https://doi.org/10.48550/arXiv.2502.15539
doi.org
PtrHash: Minimal Perfect Hashing at RAM Throughput Read at the source ↗
curiouscoding.nl
https://github.com/RagnarGrootKoerkamp/PtrHash
github.com
https://doi.org/10.4230/LIPIcs.SEA.2025.21
doi.org
https://curiouscoding.nl/papers/u-index.pdf
curiouscoding.nl
https://doi.org/10.48550/arXiv.2502.14488
doi.org
https://doi.org/10.4230/LIPIcs.SEA.2025.4
doi.org
https://curiouscoding.nl/papers/simd-minimizers.pdf
curiouscoding.nl
https://doi.org/10.1101/2025.01.27.634998
doi.org
SimdMinimizers: Computing random minimizers, fast Read at the source ↗
curiouscoding.nl
https://github.com/RagnarGrootKoerkamp/minimizers
github.com
https://curiouscoding.nl/talks/minimizer-talk.mp4
curiouscoding.nl
https://doi.org/10.4230/LIPIcs.SEA.2025.20
doi.org
https://curiouscoding.nl/papers/ocmu64.pdf
curiouscoding.nl
https://doi.org/10.4230/LIPIcs.IPEC.2024.35
doi.org
https://curiouscoding.nl/papers/open-closed-modmini.pdf
curiouscoding.nl
https://doi.org/10.1101/2024.11.02.621600
doi.org
https://curiouscoding.nl/papers/open-closed-modmini-preprint.pdf
curiouscoding.nl
https://doi.org/10.1186/s13015-025-00270-0
doi.org
https://curiouscoding.nl/papers/sampling-lower-bound.pdf
curiouscoding.nl
https://doi.org/10.1101/2024.09.06.611668
doi.org
https://curiouscoding.nl/papers/sampling-lower-bound-preprint.pdf
curiouscoding.nl
A near-tight lower bound on minimizer density Read at the source ↗
curiouscoding.nl
https://docs.google.com/presentation/d/1bFe6EWFYNYJHJZpdi4HfhrREt_Wxh4JOXyqR_cWsnio/edit?usp=sharing
docs.google.com
https://github.com/treangenlab/sampling-scheme-analysis
github.com
https://doi.org/10.1093/bioinformatics/btae736
doi.org
https://curiouscoding.nl/papers/modmini.pdf
curiouscoding.nl
https://doi.org/10.1101/2024.05.25.595898
doi.org
https://curiouscoding.nl/slides/WABI-2024.pdf
curiouscoding.nl
Mod-minimizers and other minimizers Read at the source ↗
curiouscoding.nl
https://github.com/jermp/minimizers
github.com
https://doi.org/10.4230/LIPIcs.WABI.2024.11
doi.org
https://curiouscoding.nl/papers/astarpa2.pdf
curiouscoding.nl
https://doi.org/10.1101/2024.03.24.586481
doi.org
https://docs.google.com/presentation/d/1_wF9SE8k-sWn6cEqns2I54NYpRbJLt8ev2ip02WMWOA/edit
docs.google.com
https://github.com/RagnarGrootKoerkamp/astar-pairwise-aligner
github.com
https://doi.org/10.4230/LIPIcs.WABI.2024.17
doi.org
https://curiouscoding.nl/papers/astarpa.pdf
curiouscoding.nl
https://doi.org/10.1101/2022.09.19.508631
doi.org
https://curiouscoding.nl/papers/astarpa-preprint.pdf
curiouscoding.nl
https://docs.google.com/presentation/d/1VHM0GADifQ6COi4VpUn3FNTtt-NxwFLHa7itAbx1GJM/edit?usp=sharing
docs.google.com
https://doi.org/10.1093/bioinformatics/btae032
doi.org
https://doi.org/10.1016/j.tcs.2021.06.022
doi.org
https://doi.org/10.23638/DMTCS-21-1-10
doi.org
Obsessed with Low Latency? Be Part of P99 CONF 2026 Read at the source ↗
p99conf.io
https://algo-conference.org/2026/esa/
algo-conference.org
https://algo-conference.org/2026/wabi/
algo-conference.org
https://www.uni-trier.de/en/universitaet/fachbereiche-faecher/fachbereich-iv/faecher/informatikwissenschaften/professuren/theoretische-informatik/research/conferences-and-workshops/translate-to-englisch-cie-2026
uni-trier.de
https://iggsy.org/
iggsy.org
https://sea2026.github.io/
sea2026.github.io
https://recomb-seq.github.io/seq2026/program
recomb-seq.github.io
https://recomb.org/recomb2026/program
recomb.org
https://dsb-meeting.github.io/DSB2026/
dsb-meeting.github.io
https://www.p99conf.io/session/40x-faster-binary-search/
p99conf.io
https://regindex.github.io/sea2025.github.io/
regindex.github.io
https://dsb-meeting.github.io/DSB2025/
dsb-meeting.github.io
https://algo-conference.org/2024/wabi/
algo-conference.org
https://recomb-seq.github.io/history/2024/schedule/
recomb-seq.github.io
https://docs.google.com/presentation/d/1_wF9SE8k-sWn6cEqns2I54NYpRbJLt8ev2ip02WMWOA/edit?usp=sharing
docs.google.com
https://pangenome.github.io/MemPanG24/
pangenome.github.io
https://iggsy.org/2024
iggsy.org
https://iggsy.org/2022
iggsy.org
https://diamantcluster.nl/events/event/diamant-symposium-spring-2016/
diamantcluster.nl
https://ragnargrootkoerkamp.nl/upload/simdsketch-talk.mp4
ragnargrootkoerkamp.nl
https://curiouscoding.nl/talks/astarpa-talk-cwi.mp4
curiouscoding.nl