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Challenges with Semantic Mappings

cthoyt.com · published 20 January 2026

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Host
https://www.w3.org/TR/skos-reference
w3.org
https://gbv.github.io/jskos/
gbv.github.io
https://www.w3.org/TR/owl2-syntax/
w3.org
https://owlcollab.github.io/oboformat/doc/GO.format.obo-1_4.html
owlcollab.github.io
https://mapping-commons.github.io/sssom/
mapping-commons.github.io
https://incatools.github.io/ontology-development-kit
incatools.github.io
https://moex.gitlabpages.inria.fr/alignapi/edoal.html
moex.gitlabpages.inria.fr
https://ontoportal.org/
ontoportal.org
https://www.wikidata.org
wikidata.org
https://semantic.farm/mesh
semantic.farm
https://semantic.farm/hpo
semantic.farm
https://semantic.farm/umls
semantic.farm
https://github.com/biopragmatics/biomappings
github.com
https://github.com/biopragmatics/semra/blob/main/notebooks/umls-inference-analysis.ipynb
github.com
https://github.com/biopragmatics/semra
github.com
https://github.com/cthoyt/sssom-curator
github.com
https://docs.google.com/drawings/d/1jBK1-FxzfsBFd6Ro0YjQSvwJCZs1rqlLQq9FdtcEU-w/edit?usp=sharing
docs.google.com
https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2454
github.com
https://semantic.farm/registry/iao
semantic.farm
http://purl.obolibrary.org/obo/IAO_0000315
purl.obolibrary.org
http://schema.org/abstract
schema.org
https://semantic.farm/mesh:D000069856
semantic.farm
https://semantic.farm/hp:0033591
semantic.farm
https://sssom-curator.readthedocs.io/en/latest/projects.html
sssom-curator.readthedocs.io
https://basic-formal-ontology.org
basic-formal-ontology.org
https://obofoundry.org
obofoundry.org
https://douroucouli.wordpress.com/2022/08/10/shadow-concepts-considered-harmful/
douroucouli.wordpress.com
https://semantic.farm/ogms
semantic.farm
http://purl.obolibrary.org/obo/OGMS_0000031
purl.obolibrary.org
https://semantic.farm/efo
semantic.farm
http://www.ebi.ac.uk/efo/EFO_0000408
ebi.ac.uk
https://semantic.farm/mondo
semantic.farm
http://purl.obolibrary.org/obo/MONDO_0000001
purl.obolibrary.org
http://purl.obolibrary.org/obo/BFO_0000016
purl.obolibrary.org
https://semantic.farm/gsso
semantic.farm
http://purl.obolibrary.org/obo/GSSO_000486
purl.obolibrary.org
http://purl.obolibrary.org/obo/BFO_0000015
purl.obolibrary.org
https://semantic.farm/doid
semantic.farm
https://link.springer.com/article/10.1186/2041-1480-2-S2-S6
link.springer.com
https://github.com/OBOFoundry/COB/pull/226
github.com
https://www.wikidata.org/wiki/Q8054
wikidata.org
http://semanticscience.org/resource/SIO_010043
semanticscience.org
http://purl.obolibrary.org/obo/PR_000000001
purl.obolibrary.org
https://semantic.farm/cl
semantic.farm
http://purl.obolibrary.org/obo/SO_0000704
purl.obolibrary.org
https://semantic.farm/ro
semantic.farm
https://semantic.farm/RO:0002205
semantic.farm
https://docs.google.com/drawings/d/1rBofcaQxBFuYX0OzhCvBkigSNFWLclAbQ_X7zG7PRKA/edit?usp=sharing
docs.google.com
https://semantic.farm/registry/semapv
semantic.farm
https://doi.org/10.1093/bioinformatics/btaf542
doi.org
https://docs.google.com/drawings/d/1C5l1UmwKohMsgprSXRK6Lo2egLsRWhXPIfoVo09tJ9I/edit?usp=sharing
docs.google.com
https://docs.google.com/drawings/d/1AfCR35ra3FyQMulaTlynVZKswLbj8gp5MA4N2ipFe1I/edit?usp=sharing
docs.google.com
https://doi.org/10.32388/DYZ5J3
doi.org
https://github.com/pykeen/pykeen/
github.com
https://coli-conc.gbv.de/cocoda/
coli-conc.gbv.de