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Why we're building omics

claymcleod.dev · published 26 July 2026

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https://github.com/stjude-rust-labs/omics
github.com
https://docs.rs/chainfile/latest/chainfile/
docs.rs
https://docs.rs/omics-coordinate/latest/omics_coordinate/
docs.rs
https://genome-blog.gi.ucsc.edu/blog/2016/12/12/the-ucsc-genome-browser-coordinate-counting-systems/
genome-blog.gi.ucsc.edu
https://github.com/arq5x/bedtools2
github.com
https://github.com/arq5x/bedtools2/issues/311
github.com
https://github.com/arq5x/bedtools2/commit/3d027c97a038b83ee4592bbeaad157c4e14b5000
github.com
https://github.com/arq5x/bedtools2/commit/fbf268646b9d21ad1448b3e47f594974a38b28cd
github.com
https://github.com/rust-bio/rust-htslib
github.com
https://docs.rs/rust-htslib/latest/rust_htslib/bam/record/struct.Record.html
docs.rs
https://samtools.github.io/hts-specs/SAMv1.pdf
samtools.github.io
https://bioinformatics.stackexchange.com/a/17757
bioinformatics.stackexchange.com
https://github.com/zaeleus/noodles
github.com
https://github.com/zaeleus/noodles/blob/noodles-core-0.20.0/noodles-core/src/position.rs
github.com
https://github.com/zaeleus/noodles/blob/noodles-vcf-0.88.0/noodles-vcf/src/variant/record.rs
github.com
https://github.com/zaeleus/noodles/blob/noodles-vcf-0.88.0/noodles-vcf/src/io/reader/query.rs
github.com
https://github.com/zaeleus/noodles/blob/noodles-vcf-0.88.0/noodles-vcf/src/variant/record_buf/alternate_bases.rs
github.com
https://docs.rs/coitrees/0.4.0/src/coitrees/nosimd.rs.html
docs.rs
https://genome.ucsc.edu/goldenpath/help/chain.html
genome.ucsc.edu
https://github.com/stjude-rust-labs/chainfile/blob/v0.4.0/src/alignment/section/header/sequence.rs
github.com
https://github.com/stjude-rust-labs/chainfile/blob/v0.4.0/src/liftover/stepthrough.rs
github.com
https://github.com/stjude-rust-labs/chainfile/blob/v0.4.0/src/liftover/machine.rs
github.com
https://github.com/stjude-rust-labs/chainfile/blob/v0.4.0/examples/liftover.rs
github.com
https://github.com/stjude-rust-labs/chainfile/blob/v0.4.0/examples/chain_check.rs
github.com
https://github.com/zaeleus/noodles/blob/noodles-core-0.15.0/noodles-core/src/position.rs
github.com
https://github.com/stjude-rust-labs/omics/tree/main/omics-coordinate/benches
github.com
https://github.com/stjude-rust-labs/omics/pull/17
github.com
https://github.com/stjude-rust-labs/omics/pull/15
github.com
https://github.com/stjude-rust-labs/omics/pull/16
github.com
https://github.com/stjude-rust-labs/omics/pull/20
github.com
https://github.com/stjude-rust-labs/omics/issues
github.com