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"01a08791-d09b-739e-a87b-8a354eedd074", "title": "Pragmatic tips: Conda Packages", "url": "https://jrhawley.ca/2019/03/28/conda-packages-intro", "published_at": "2019-03-28T04:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a354f74bf63", "title": "Designing dark academic posters", "url": "https://jrhawley.ca/2019/01/17/dark-academic-poster", "published_at": "2019-01-17T05:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a35501106bd", "title": "Academic twitter isn't for me", "url": "https://jrhawley.ca/2019/01/04/academic-twitter", "published_at": "2019-01-04T05:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a3550a46403", "title": "The cleverness behind Tajima's D statistic", "url": "https://jrhawley.ca/2018/12/04/tajima-d", "published_at": "2018-12-04T05:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a355136b513", "title": "Don't trust your data at first glance", "url": "https://jrhawley.ca/2018/11/23/file-validation", "published_at": "2018-11-23T05:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a3551feaa3e", "title": "\"Support\" over \"coverage\"", "url": "https://jrhawley.ca/2018/08/24/read-coverage-support", "published_at": "2018-08-24T04:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a355253a6d7", "title": "The woes of using bioinformatics software: a case study in trying to install ChAMP", "url": "https://jrhawley.ca/2018/07/18/champ-installation-notes", "published_at": "2018-07-18T04:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a35530172c5", "title": "PubMed + RSS for following specific authors", "url": "https://jrhawley.ca/2018/05/26/pubmed-rss", "published_at": "2018-05-26T04:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a35536d7404", "title": "Git flow for scientific analysis", "url": "https://jrhawley.ca/2018/05/11/git-flow-science", "published_at": "2018-05-11T04:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a3554672b66", "title": "How I Maintain a Reproducible Computational Environment", "url": "https://jrhawley.ca/2018/01/18/reproducible-stack", "published_at": "2018-01-18T05:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a35554c6ed8", "title": "PubPeer for Microsoft Edge", "url": "https://jrhawley.ca/2017/10/22/pubpeer-for-edge", "published_at": "2017-10-22T04:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a3555e24313", "title": "Using GitHub Pages in Visual Studio Code", "url": "https://jrhawley.ca/2017/09/11/github-pages-vscode", "published_at": "2017-09-11T04:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a3556dfd0b1", "title": "Visualizing layered fluids in a rotating reference frame", "url": "https://jrhawley.ca/2015/12/16/rotating-fluids", "published_at": "2015-12-16T05:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a3557525444", "title": "CRISPieR: Re-engineering CRISPR-Cas9 with functional applications in eukaryotic systems", "url": "https://jrhawley.ca/2015/09/28/igem2015", "published_at": "2015-09-28T04:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a3558502ad5", "title": "Quasi-geostrophic models and Hamiltonian dynamics", "url": "https://jrhawley.ca/2015/08/31/usra-fluids", "published_at": "2015-08-31T04:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a3558a2dc39", "title": "Staphylocide: Stopping Antibiotic Resistance Through Gene Silencing", "url": "https://jrhawley.ca/2014/11/03/igem2014", "published_at": "2014-11-03T05:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a355904cca6", "title": "Quantum Communication Complexity", "url": "https://jrhawley.ca/2014/08/31/usra-iqc", "published_at": "2014-08-31T04:00:00+00:00" }, { "id": "01a08791-d09b-739e-a87b-8a35590815c9", "title": "Controlled Modification and Intercellular Transmission of a DNA Message", "url": "https://jrhawley.ca/2013/11/04/igem2013", "published_at": "2013-11-04T05:00:00+00:00" } ] posts Claim your blog

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2026

Write the documentation first original ↗

11 May 2026

Making a Tree-sitter parser for FASTA original ↗

19 Apr 2026

Philosophy of science is fascinating original ↗

3 Feb 2026

I like reading people's theses original ↗

9 Jan 2026

2025

We need an XDG spec for repositories original ↗

7 Dec 2025

It's your job to understand original ↗

25 Nov 2025

Performing surgery on my Zotero database original ↗

28 Aug 2025

Blogroll original ↗

13 Aug 2025

Recognizing National Indigenous Peoples Day original ↗

21 Jun 2025

2024

Science is political and always has been original ↗

15 Nov 2024

Most of your favourite mathematicians knew each other original ↗

16 Jul 2024

Resources for the successful computational biologist original ↗

22 Jun 2024

2023

Remote collaboration fuses fewer breakthrough ideas? Probably not.original ↗

1 Dec 2023

Unlearning Grad School - Part IIa: Low Stipends and Wages original ↗

24 Oct 2023

Unlearning Grad School - Part II: Sources of Stress original ↗

23 Oct 2023

Unlearning Grad School - Part I: What I Felt original ↗

10 Oct 2023

Unlearning Grad School original ↗

9 Oct 2023

Independence of mean and variance estimators original ↗

31 Aug 2023

Blocked by Cloudflare original ↗

7 Aug 2023

What's missing from values in data tables original ↗

28 Jul 2023

Rethinking Nix for reproducible science original ↗

6 Apr 2023

Cross-compiling with Rust original ↗

20 Feb 2023

2022

Just leave original ↗

10 Dec 2022

An Ode to My Road Bike original ↗

9 Aug 2022

Calculating the cosine similarity across a set of samples original ↗

17 Jul 2022

Killing time in a new city original ↗

5 Jun 2022

A command line interface for HomeBank original ↗

14 Apr 2022

Acting on COVID-19 rapid antigen tests original ↗

4 Feb 2022

2021

A microcosm of life: lessons learned from a PhD original ↗

2 Dec 2021

Testing the Nix environment manager for computational biology original ↗

18 Oct 2021

The 3D topology of the prostate cancer genome original ↗

12 Oct 2021

Parallelization isn't always faster original ↗

20 Aug 2021

Ignorance is strength original ↗

31 Jul 2021

Limit of a t distribution original ↗

27 Jun 2021

Documents as code and LaTeX original ↗

18 May 2021

Strings, OsStrings, and PathBufs in Rust original ↗

6 May 2021

Notes, tasks, and planning with Org mode original ↗

18 Apr 2021

Illumina flow cell teardown original ↗

13 Mar 2021

Is your null hypothesis, or your model, more likely to be rejected?original ↗

1 Mar 2021

Running Linux GUI applications on Windows original ↗

22 Feb 2021

"Buying" music sucks original ↗

11 Feb 2021

Understanding file permissions original ↗

2 Feb 2021

Pragmatic tips: Conda CLI original ↗

31 Jan 2021

A solution to dependency hell: static binaries by default original ↗

25 Jan 2021

Why I like Rust - and why it's annoying original ↗

22 Jan 2021

Check your references original ↗

14 Jan 2021

2020

Experimenting with web monetization original ↗

16 Dec 2020

Colours and the scientific eye original ↗

26 Nov 2020

Pragmatic tips: Emacs original ↗

21 Nov 2020

A more sane way to modify your PATH original ↗

16 Nov 2020

A collection of useful command line tools original ↗

14 Nov 2020

Notes from a mathematical physics degree original ↗

11 Nov 2020

Aggregate peak analysis with Hi-C data original ↗

29 Oct 2020

What is differential analysis, anyway?original ↗

15 Oct 2020

The Central Limit Theorem and estimation of variance original ↗

8 Oct 2020

Notation and thinking in math original ↗

4 Oct 2020

How to keep track of your bills original ↗

19 Sept 2020

Pragmatic tips: remote teaching original ↗

11 Sept 2020

Teaching stats for statistical thinking original ↗

10 Sept 2020

Anti-curl and Poincare's lemma original ↗

6 Aug 2020

Physical symmetries result from what we think good scientific theories are original ↗

3 Aug 2020

A marketplace of half-baked ideas original ↗

3 Aug 2020

Creating simple genome annotation tables original ↗

19 Jun 2020

Please, show your work original ↗

29 May 2020

A fully-fledged toolchain for Rust on Windows original ↗

25 May 2020

Creating a custom genome annotation for HiGlass original ↗

15 May 2020

Jeffrey Epstein, Harvard, and Martin Nowak original ↗

11 May 2020

Structuring code for ggplot original ↗

28 Apr 2020

A Vim user's introduction to Emacs original ↗

8 Mar 2020

High impact papers are not how you learn science original ↗

13 Feb 2020

2019

Reading List 2019 original ↗

31 Dec 2019

Well-defined biology original ↗

19 Dec 2019

Now is an exciting time for mathematicians in the biological sciences original ↗

3 Oct 2019

Pragmatic guidelines for bioinformatics software tools original ↗

27 May 2019

Pragmatic tips: Conda Packages original ↗

28 Mar 2019

Designing dark academic posters original ↗

17 Jan 2019

Academic twitter isn't for me original ↗

4 Jan 2019

2018

The cleverness behind Tajima's D statistic original ↗

4 Dec 2018

Don't trust your data at first glance original ↗

23 Nov 2018

"Support" over "coverage"original ↗

24 Aug 2018

The woes of using bioinformatics software: a case study in trying to install ChAMP original ↗

18 Jul 2018

PubMed + RSS for following specific authors original ↗

26 May 2018

Git flow for scientific analysis original ↗

11 May 2018

How I Maintain a Reproducible Computational Environment original ↗

18 Jan 2018

2017

PubPeer for Microsoft Edge original ↗

22 Oct 2017

Using GitHub Pages in Visual Studio Code original ↗

11 Sept 2017

2015

Visualizing layered fluids in a rotating reference frame original ↗

16 Dec 2015

CRISPieR: Re-engineering CRISPR-Cas9 with functional applications in eukaryotic systems original ↗

28 Sept 2015

Quasi-geostrophic models and Hamiltonian dynamics original ↗

31 Aug 2015

2014

Staphylocide: Stopping Antibiotic Resistance Through Gene Silencing original ↗

3 Nov 2014

Quantum Communication Complexity original ↗

31 Aug 2014

2013

Controlled Modification and Intercellular Transmission of a DNA Message original ↗

4 Nov 2013