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"published_at": "2022-09-02T13:37:28+00:00" }, { "id": "01a0c54a-f312-72d6-a4b2-ffbb763a7856", "title": "Map, join, and pivot in R", "url": "https://davetang.org/muse/2022/08/31/map-join-and-pivot-in-r/", "published_at": "2022-08-31T07:14:46+00:00" }, { "id": "01a0c54a-f312-72d6-a4b2-ffbb768847ab", "title": "Mapping full-length mRNA sequences", "url": "https://davetang.org/muse/2022/08/08/mapping-full-length-mrna-sequences/", "published_at": "2022-08-08T02:17:16+00:00" }, { "id": "01a0c54a-f312-72d6-a4b2-ffbb776f3c66", "title": "Finding out weather conditions from the command line", "url": "https://davetang.org/muse/2022/03/17/finding-out-weather-conditions-from-the-command-line/", "published_at": "2022-03-17T14:06:33+00:00" }, { "id": "01a0c54a-f312-72d6-a4b2-ffbb77bccf74", "title": "Omicron variants", "url": "https://davetang.org/muse/2022/01/26/omicron-variants/", "published_at": "2022-01-26T01:18:35+00:00" }, { "id": "01a0c54a-f312-72d6-a4b2-ffbb786f13a4", "title": "Storing FASTQ as unaligned CRAM", "url": "https://davetang.org/muse/2022/01/20/storing-fastq-as-unaligned-cram/", "published_at": "2022-01-20T23:59:02+00:00" }, { "id": "01a0c54a-f312-72d6-a4b2-ffbb78c379bd", "title": "Updating my Docker documentation", "url": "https://davetang.org/muse/2022/01/11/updating-my-docker-documentation/", "published_at": "2022-01-11T05:50:49+00:00" }, { "id": "01a0c54a-f312-72d6-a4b2-ffbb78df0a63", "title": "Creating reproducible documentation part 2", "url": "https://davetang.org/muse/2021/12/21/creating-reproducible-documentation-part-2/", "published_at": "2021-12-21T12:42:13+00:00" }, { "id": "01a0c54a-f312-72d6-a4b2-ffbb7973a02b", "title": "Grepping a list with a list", "url": "https://davetang.org/muse/2021/12/08/grepping-a-list-with-a-list/", "published_at": "2021-12-08T12:18:54+00:00" }, { "id": "01a0c54a-f312-72d6-a4b2-ffbb7990c91b", "title": "On blogging", "url": "https://davetang.org/muse/2021/09/18/on-blogging/", "published_at": "2021-09-18T02:58:56+00:00" }, { "id": "01a0c54a-f312-72d6-a4b2-ffbb7a62deab", "title": "On learning", "url": "https://davetang.org/muse/2021/09/04/on-learning/", "published_at": "2021-09-04T16:20:44+00:00" }, { "id": "01a0c553-33ea-72ef-91c2-b8465e8c6c1b", "title": "Add Docker to your toolkit", "url": "https://davetang.org/muse/2021/09/01/add-docker-to-your-toolkit/", "published_at": "2021-09-01T13:56:42+00:00" }, { "id": "01a0c553-33ea-72ef-91c2-b8465ea66b19", "title": "Creating reproducible documentation", "url": "https://davetang.org/muse/2021/08/08/creating-reproducible-documentation/", "published_at": "2021-08-08T01:38:43+00:00" }, { "id": "01a0c553-33ea-72ef-91c2-b8465f23364b", "title": "Running RStudio Server with Docker", "url": "https://davetang.org/muse/2021/04/24/running-rstudio-server-with-docker/", "published_at": "2021-04-24T05:49:30+00:00" }, { "id": "01a0c553-33ea-72ef-91c2-b8465f8dbb53", "title": "SQL group by statement on the command line", "url": "https://davetang.org/muse/2021/04/13/sql-group-by-statement-on-the-command-line/", "published_at": "2021-04-13T14:20:48+00:00" }, { "id": "01a0c553-33ea-72ef-91c2-b8465f99b0bd", "title": "Monte Carlo integration", "url": "https://davetang.org/muse/2020/10/09/monte-carlo-integration/", "published_at": "2020-10-09T00:28:44+00:00" }, { "id": "01a0c553-33ea-72ef-91c2-b8465fade402", "title": "Ten years", "url": "https://davetang.org/muse/2020/10/01/ten-years/", "published_at": "2020-10-01T14:23:18+00:00" }, { "id": "01a0c553-33ea-72ef-91c2-b8466006f8f2", "title": "Sequence analysis of SARS-CoV-2 part 3", "url": "https://davetang.org/muse/2020/03/12/sequence-analysis-of-sars-cov-2-part-3/", "published_at": "2020-03-12T09:18:03+00:00" }, { "id": "01a0c553-33ea-72ef-91c2-b84660395634", "title": "Sequence analysis of SARS-CoV-2 part 2", "url": "https://davetang.org/muse/2020/03/06/sequence-analysis-of-sars-cov-2-part-2/", "published_at": "2020-03-06T06:13:26+00:00" }, { "id": "01a0c553-33ea-72ef-91c2-b84660890286", "title": "Sequence analysis of SARS-CoV-2", "url": "https://davetang.org/muse/2020/03/05/sequence-analysis-sars-cov-2/", "published_at": "2020-03-05T13:59:02+00:00" }, { "id": "01a0c553-33ea-72ef-91c2-b84660aba47b", "title": "Domain renewal", "url": "https://davetang.org/muse/2020/02/25/domain-renewal/", "published_at": "2020-02-25T10:23:27+00:00" }, { "id": "01a0c55b-9d7b-7013-8689-eccafbca4520", "title": "Using Google Cloud SDK to download GATK resource bundle files", "url": "https://davetang.org/muse/2020/02/21/using-google-cloud-sdk-to-download-gatk-resource-bundle-files/", "published_at": "2020-02-21T05:37:37+00:00" }, { "id": "01a0c55b-9d7b-7013-8689-eccafc8b366b", "title": "Learning WDL", "url": "https://davetang.org/muse/2020/01/09/learning-wdl/", "published_at": "2020-01-09T07:46:22+00:00" }, { "id": "01a0c55b-9d7b-7013-8689-eccafd1119f5", "title": "Plotting weather data using R", "url": "https://davetang.org/muse/2020/01/08/plotting-weather-data-using-r/", "published_at": "2020-01-08T06:36:10+00:00" }, { "id": "01a0c55b-9d7b-7013-8689-eccafd53d3f9", "title": "Execute gatk-workflows locally", "url": "https://davetang.org/muse/2019/12/24/execute-gatk-workflows-locally/", "published_at": "2019-12-24T23:59:49+00:00" }, { "id": "01a0c55b-9d7b-7013-8689-eccafd5e7e1c", "title": "Uploading to Amazon S3 using AWS CLI", "url": "https://davetang.org/muse/2019/12/23/uploading-to-amazon-s3/", "published_at": "2019-12-23T03:53:07+00:00" }, { "id": "01a0c55b-9d7b-7013-8689-eccafddfaa6f", "title": "Reproducible Bioinformatics", "url": "https://davetang.org/muse/2019/12/04/reproducible-bioinformatics/", "published_at": "2019-12-04T16:43:32+00:00" }, { "id": "01a0c55b-9d7b-7013-8689-eccafea37b7c", "title": "Comparing VCF files", "url": "https://davetang.org/muse/2019/09/02/comparing-vcf-files/", "published_at": "2019-09-02T13:08:04+00:00" }, { "id": "01a0c55b-9d7b-7013-8689-eccaff444691", "title": "Setting up Windows for bioinformatics in 2019", "url": "https://davetang.org/muse/2019/04/09/setting-up-windows-for-bioinformatics-in-2019/", "published_at": "2019-04-09T16:46:57+00:00" }, { "id": "01a0c55b-9d7b-7013-8689-eccb001f20cb", "title": "Importing vector images into R", "url": "https://davetang.org/muse/2019/02/22/importing-vector-images-into-r/", "published_at": "2019-02-22T17:54:25+00:00" }, { "id": "01a0c55b-9d7b-7013-8689-eccb002674e6", "title": "The Golden Rule of Bioinformatics", "url": "https://davetang.org/muse/2019/01/23/the-golden-rule-of-bioinformatics/", "published_at": "2019-01-23T07:49:46+00:00" } ] posts Claim your blog

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2026

Bioinformatics and AI original ↗

18 Jul 2026

Getting locked in original ↗

25 Jun 2026

Organic original ↗

8 May 2026

State of the Blog original ↗

5 Feb 2026

2025

15th Anniversary original ↗

1 Oct 2025

On professionalism original ↗

30 Aug 2025

Hosting your own Git repositories original ↗

13 Aug 2025

How long does it take to run gpt-oss:20b?original ↗

10 Aug 2025

Retrieval-Augmented Generation original ↗

27 May 2025

One tip per day original ↗

14 May 2025

Doing the same thing over and over original ↗

24 Apr 2025

Git stash original ↗

31 Mar 2025

Thoughts on AI original ↗

7 Mar 2025

TIL about Open WebUI original ↗

28 Feb 2025

TIL about Ollama and DeepSeek original ↗

28 Jan 2025

TIL about Jan, an open source alternative to ChatGPT original ↗

6 Jan 2025

Gene Set Variation Analysis original ↗

6 Jan 2025

Using the GenomicDataCommons package original ↗

6 Jan 2025

Downloading molecular signatures from MSigDB in R original ↗

6 Jan 2025

2024

Ensembl Gene IDs to gene symbols original ↗

14 Nov 2024

Running a fork bomb original ↗

1 Nov 2024

An example differential gene expression results table original ↗

31 Oct 2024

An example RNA-seq count table original ↗

22 Oct 2024

14th Anniversary original ↗

1 Oct 2024

Getting stuff done original ↗

23 Sept 2024

The potato paradox original ↗

5 Sept 2024

Rate limited by GitHub when using remotes::install_github()original ↗

23 Aug 2024

Check what genes are correlated to your gene of interest original ↗

10 Aug 2024

Split a multi-valued column into multiple columns original ↗

10 Aug 2024

Find out which function is being used in R original ↗

6 Jun 2024

Prevent download errors in R by increasing the timeout original ↗

30 May 2024

Getting something to work once is not hard original ↗

27 May 2024

What fraction of 10x reads map to ribosomal proteins?original ↗

21 May 2024

How and where to get information?original ↗

14 May 2024

Naming variables and functions original ↗

8 May 2024

Teaching an old bioinformatician new tricks original ↗

2 May 2024

Downloading data from Zenodo using zenodo_get original ↗

12 Apr 2024

Making precision medicine knowledge available for everyone original ↗

8 Mar 2024

Domain and hosting renewed until 2026 original ↗

5 Mar 2024

Check when install.packages fails in R original ↗

15 Feb 2024

Testing Singularity builds original ↗

14 Feb 2024

Running RStudio Server with Singularity original ↗

9 Feb 2024

Building Singularity images in layers original ↗

8 Feb 2024

2023

Download from the SRA using ffq (and ffs)original ↗

17 Aug 2023

TIL about code snippets in RStudio original ↗

27 Jul 2023

The tidyr pivot_longer and pivot_wider functions using base R original ↗

26 Jul 2023

The things that matter original ↗

14 Jul 2023

Deciding which bioinformatics tool to use original ↗

12 Jul 2023

Maintaining a (bioinformatics) blog original ↗

5 Jul 2023

Wrap and unwrap a line in Vim original ↗

2 Jul 2023

Amino acid quiz using Python original ↗

27 Jun 2023

Reading a list of files into a single R data frame original ↗

23 Jun 2023

Reading irregular data into R original ↗

2 Jun 2023

Egoprompting original ↗

17 May 2023

Check where a gene is expressed from the command line original ↗

16 May 2023

Setting up a VNC server on AWS EC2 original ↗

20 Apr 2023

TIL that you can download SRA data from AWS original ↗

6 Apr 2023

R function for calculating confusion matrix rates original ↗

9 Mar 2023

Grepping PowerPoint files original ↗

1 Mar 2023

Running RStudio Server with R-4.2.2 with Docker original ↗

24 Feb 2023

TIL that you can customise BLAST output original ↗

15 Feb 2023

Stop BLAST from phoning home original ↗

8 Feb 2023

Learning about ChatGPT via ChatGPT original ↗

3 Feb 2023

Bash script that accepts short, long, and positional arguments original ↗

31 Jan 2023

2022

Running RStudio Server on Amazon EC2 original ↗

7 Dec 2022

Amazon Elastic Block Store storage original ↗

6 Dec 2022

Twelfth year: Python original ↗

5 Oct 2022

Backticks in R original ↗

7 Sept 2022

Wrapping R vectors with parentheses original ↗

5 Sept 2022

Split single column of key-value pairs into multiple columns original ↗

2 Sept 2022

Map, join, and pivot in R original ↗

31 Aug 2022

Mapping full-length mRNA sequences original ↗

8 Aug 2022

Finding out weather conditions from the command line original ↗

17 Mar 2022

Omicron variants original ↗

26 Jan 2022

Storing FASTQ as unaligned CRAM original ↗

20 Jan 2022

Updating my Docker documentation original ↗

11 Jan 2022

2021

Creating reproducible documentation part 2 original ↗

21 Dec 2021

Grepping a list with a list original ↗

8 Dec 2021

On blogging original ↗

18 Sept 2021

On learning original ↗

4 Sept 2021

Add Docker to your toolkit original ↗

1 Sept 2021

Creating reproducible documentation original ↗

8 Aug 2021

Running RStudio Server with Docker original ↗

24 Apr 2021

SQL group by statement on the command line original ↗

13 Apr 2021

2020

Monte Carlo integration original ↗

9 Oct 2020

Ten years original ↗

1 Oct 2020

Sequence analysis of SARS-CoV-2 part 3 original ↗

12 Mar 2020

Sequence analysis of SARS-CoV-2 part 2 original ↗

6 Mar 2020

Sequence analysis of SARS-CoV-2 original ↗

5 Mar 2020

Domain renewal original ↗

25 Feb 2020

Using Google Cloud SDK to download GATK resource bundle files original ↗

21 Feb 2020

Learning WDL original ↗

9 Jan 2020

Plotting weather data using R original ↗

8 Jan 2020

2019

Execute gatk-workflows locally original ↗

24 Dec 2019

Uploading to Amazon S3 using AWS CLI original ↗

23 Dec 2019

Reproducible Bioinformatics original ↗

4 Dec 2019

Comparing VCF files original ↗

2 Sept 2019

Setting up Windows for bioinformatics in 2019 original ↗

9 Apr 2019

Importing vector images into R original ↗

22 Feb 2019

The Golden Rule of Bioinformatics original ↗

23 Jan 2019