corpus.blog
41554 blogs · [ { "id": "01a0875a-27e3-73b3-9807-dc55b1fba8dd", "title": "Deep learning statistical arbitrage part 1 - replication", "url": "https://bsiranosian.com/blog/deep-learning-statistical-arbitrage-part-1/", "published_at": "2026-06-29T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b290973a", "title": "Revisiting VIX Call hedging - 2025 data update and new strategies", "url": "https://bsiranosian.com/blog/vix-call-update/", "published_at": "2026-06-24T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b3905e45", "title": "Launching Radical Numerics", "url": "https://bsiranosian.com/blog/launching-radical-numerics/", "published_at": "2026-06-15T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b416c11d", "title": "Reducing RNA-seq batch effects by re-aligning TCGA and GTEx", "url": "https://bsiranosian.com/blog/reducing-rna-seq-batch-effects-by-re-aligning-tcga-and-gtex/", "published_at": "2025-11-11T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b472d4a5", "title": "s3stasher simplifies using AWS S3 in python", "url": "https://bsiranosian.com/blog/s3stasher-simplifies-using-aws-s3-in-python/", "published_at": "2025-11-09T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b49c5dd1", "title": "Fixing a Milli-q purifier for 99% off", "url": "https://bsiranosian.com/blog/fixing-a-milli-q-purifier-for-99-off/", "published_at": "2025-08-05T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b54400fe", "title": "Does AMD 3D V-Cache help in bioinformatics?", "url": "https://bsiranosian.com/blog/does-amd-3d-v-cache-help-in-bioinformatics/", "published_at": "2025-05-26T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b564a0f8", "title": "Tail risk hedging with VIX calls (Stanford MSE448 final)", "url": "https://bsiranosian.com/blog/tail-risk-hedging-with-vix-calls-stanford-mse448-final/", "published_at": "2025-05-25T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b643f490", "title": "Cross-account AWS FSx for Lustre and S3 data repository associations", "url": "https://bsiranosian.com/blog/cross-account-aws-fsx-for-lustre-and-s3-data-repository-associations/", "published_at": "2023-12-06T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b743026d", "title": "Introducing the ComputeBench: the cloud development environment for bioinformatics", "url": "https://bsiranosian.com/blog/introducing-the-computebench/", "published_at": "2023-11-21T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b777f642", "title": "Accelerated computing is the future of genomics", "url": "https://bsiranosian.com/blog/accelerated-computing-is-the-future-of-genomics/", "published_at": "2023-01-10T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b83f194f", "title": "Bioinformatics in the cloud, on a budget", "url": "https://bsiranosian.com/blog/bioinformatics-in-the-cloud-on-a-budget/", "published_at": "2022-10-22T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b8f5bb91", "title": "Getting a industry job after grad school", "url": "https://bsiranosian.com/blog/getting-a-industry-job-after-grad-school/", "published_at": "2022-10-02T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b9851f0d", "title": "Why are bioinformatics workflows different?", "url": "https://bsiranosian.com/blog/why-are-bioinformatics-workflows-different/", "published_at": "2022-08-14T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55b9898b96", "title": "Deploying redun to AWS Batch - troubleshooting", "url": "https://bsiranosian.com/blog/deploying-redun-to-aws-batch-troubleshooting/", "published_at": "2022-07-05T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55ba295dee", "title": "Trying out redun - the newest workflow manager on the block", "url": "https://bsiranosian.com/blog/trying-out-redun-the-newest-workflow-manager-on-the-block/", "published_at": "2022-07-05T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55ba7d360f", "title": "Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults (2)", "url": "https://bsiranosian.com/blog/rare-transmission-of-commensal-and-pathogenic-bacteria-in-the-gut-microbiome-of-hospitalized-adults-2/", "published_at": "2022-02-02T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55bb0b59f5", "title": "Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults (1)", "url": "https://bsiranosian.com/blog/rare-transmission-of-commensal-and-pathogenic-bacteria-in-the-gut-microbiome-of-hospitalized-adults-1/", "published_at": "2022-02-01T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55bb459d92", "title": "Moving into aging research - in dogs!", "url": "https://bsiranosian.com/blog/moving-into-aging-research-in-dogs/", "published_at": "2021-11-01T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55bb7e3924", "title": "Tail risk hedging - replication of the VXTH index", "url": "https://bsiranosian.com/blog/tail-risk-hedging-replication-of-the-vxth-index/", "published_at": "2021-01-12T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55bc0eb9e0", "title": "Volatility as an asset class - replication of Doran (2020) and extension to a leveraged risk-parity portfolio", "url": "https://bsiranosian.com/blog/volatility-as-an-asset-class/", "published_at": "2021-01-05T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55bc286378", "title": "Large-scale bioinformatics in the cloud with GCP, Kubernetes and Snakemake", "url": "https://bsiranosian.com/blog/large-scale-bioinformatics-in-the-cloud-with-gcp-kubernetes-and-snakemake/", "published_at": "2020-01-08T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55bce940c9", "title": "Transmission of crAsspahge in the microbiome", "url": "https://bsiranosian.com/blog/transmission-of-crasspahge-in-the-microbiome/", "published_at": "2019-07-24T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55bdb176d7", "title": "What is crAssphage?", "url": "https://bsiranosian.com/blog/what-is-crassphage/", "published_at": "2019-07-24T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55bdfb23eb", "title": "Metagenome Assembled Genomes enhance short read classification", "url": "https://bsiranosian.com/blog/metagenome-assembled-genomes-enhance-short-read-classification/", "published_at": "2019-07-22T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55bec62e3b", "title": "Race report: China Peak Enduro 2019", "url": "https://bsiranosian.com/blog/race-report-china-peak-enduro-2019/", "published_at": "2019-07-02T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55bf87945b", "title": "Short read classification with Kraken2", "url": "https://bsiranosian.com/blog/short-read-classification-with-kraken2/", "published_at": "2019-06-20T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c031ff60", "title": "Genetic and transcriptional evolution alters cancer cell line drug response", "url": "https://bsiranosian.com/blog/genetic-and-transcriptional-evolution-alters-cancer-cell-line-drug-response/", "published_at": "2018-08-09T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c117d6d8", "title": "Joining the Bhatt lab", "url": "https://bsiranosian.com/blog/joining-the-bhatt-lab/", "published_at": "2018-06-24T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c1d20f69", "title": "Deep learning to understand and predict single-cell chromatin structure", "url": "https://bsiranosian.com/blog/deep-learning-to-understand-and-predict-single-cell-chromatin-structure/", "published_at": "2018-03-29T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c1dbd6d0", "title": "Simulating 3D chromatin structure with molecular dynamics and loop extrusion", "url": "https://bsiranosian.com/blog/simulating-chromatin-structure-with-loop-extrusion/", "published_at": "2018-03-25T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c2c979c2", "title": "Is loop extrusion responsible for the 3D structure of the genome?", "url": "https://bsiranosian.com/blog/is-loop-extrusion-responsible-for-the-3d-structure-of-the-genome/", "published_at": "2018-03-24T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c3004bff", "title": "Down and up the California coast", "url": "https://bsiranosian.com/blog/down-and-up-the-california-coast/", "published_at": "2017-10-20T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c3d5c7d7", "title": "Driving West and a Week in Tahoe", "url": "https://bsiranosian.com/blog/driving-west-and-a-week-in-tahoe/", "published_at": "2017-10-19T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c4d36860", "title": "Jasper, Glacier, Eclipse", "url": "https://bsiranosian.com/blog/jasper-glacier-eclipse/", "published_at": "2017-10-17T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c4e61fb7", "title": "Bikepacking in Banff", "url": "https://bsiranosian.com/blog/bikepacking-in-banff/", "published_at": "2017-10-05T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c500b511", "title": "Getting to know Banff", "url": "https://bsiranosian.com/blog/getting-to-know-banff/", "published_at": "2017-10-04T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c507ff49", "title": "Moving to California, the long way", "url": "https://bsiranosian.com/blog/moving-to-california-the-long-way/", "published_at": "2017-10-04T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c53ed5cf", "title": "Dublin", "url": "https://bsiranosian.com/blog/dublin/", "published_at": "2017-08-04T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c5423cae", "title": "Cardiff", "url": "https://bsiranosian.com/blog/cardiff/", "published_at": "2017-08-03T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c6283aa2", "title": "From simit and kebabs to tea and crumpets", "url": "https://bsiranosian.com/blog/onward-to-london/", "published_at": "2017-08-02T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c63b2068", "title": "Doseluna winery", "url": "https://bsiranosian.com/blog/doseluna-winery/", "published_at": "2017-07-31T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c68991a2", "title": "Assos day two - market day", "url": "https://bsiranosian.com/blog/assos-day-two-market-day/", "published_at": "2017-07-30T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c70494d7", "title": "Arriving in Assos", "url": "https://bsiranosian.com/blog/arriving-in-assos/", "published_at": "2017-07-29T00:00:00+00:00" }, { "id": "01a0875a-27e3-73b3-9807-dc55c71da8a1", "title": "Cycling around Büyükada", "url": "https://bsiranosian.com/blog/cycling-around-buyukada/", "published_at": "2017-07-27T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a744ca4d5f", "title": "Istanbul's Old City", "url": "https://bsiranosian.com/blog/istanbuls-old-city/", "published_at": "2017-07-26T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a7451496eb", "title": "Arriving in Istanbul", "url": "https://bsiranosian.com/blog/arriving-in-istanbul/", "published_at": "2017-07-24T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a745b858cc", "title": "ISCB Student Council Symposium 2017", "url": "https://bsiranosian.com/blog/iscb-student-council-symposium-2017/", "published_at": "2017-07-23T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a745f8eca2", "title": "Cesky Raj (Czech Bohemian Paradise)", "url": "https://bsiranosian.com/blog/cesky-raj-czech-bohemian-paradise/", "published_at": "2017-07-20T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a746a50910", "title": "Summer travels start NOW!", "url": "https://bsiranosian.com/blog/summer-travels-start-now/", "published_at": "2017-07-16T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a747585149", "title": "What's next: Stanford Genetics!", "url": "https://bsiranosian.com/blog/whats-next-stanford-genetics/", "published_at": "2017-05-09T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a748191d07", "title": "Vineyard 70.3 - 4th place!", "url": "https://bsiranosian.com/blog/vineyard-70-3-4th-place/", "published_at": "2016-09-12T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a748462033", "title": "4 things I learned from keynote lectures at SCS2016", "url": "https://bsiranosian.com/blog/4-things-i-learned-from-keynote-lectures-at-scs2016/", "published_at": "2016-07-25T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a748d2830f", "title": "How do you organize an international symposium?", "url": "https://bsiranosian.com/blog/how-do-you-organize-an-international-symposium/", "published_at": "2016-07-20T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a749c77d86", "title": "Use your computational skills to advance biomedical research and win cash by competing in the CMap Inference Challenge", "url": "https://bsiranosian.com/blog/use-your-computational-skills-to-advance-biomedical-research-and-win-cash-by-competing-in-the-cmap-inference-challenge/", "published_at": "2016-06-29T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74a5d4116", "title": "Cotopaxi Questival", "url": "https://bsiranosian.com/blog/cotopaxi-questival/", "published_at": "2016-05-28T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74aff3b90", "title": "Martha's Vineyard 70.3 triathlon", "url": "https://bsiranosian.com/blog/marthas-vineyard-70-3-triathlon/", "published_at": "2016-03-04T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74b3eb950", "title": "Road Trip: Final Numbers and Thoughts", "url": "https://bsiranosian.com/blog/road-trip-final-numbers-and-thoughts/", "published_at": "2015-07-04T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74c027001", "title": "Road Trip: Shenandoah NP to Boston, MA", "url": "https://bsiranosian.com/blog/road-trip-shenandoah-np-to-boston-ma/", "published_at": "2015-07-03T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74c6ddd74", "title": "Road Trip: Nashville to Atlanta", "url": "https://bsiranosian.com/blog/road-trip-nashville-to-atlanta/", "published_at": "2015-07-02T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74d453c87", "title": "Road Trip: Utah, Dever, Missouri", "url": "https://bsiranosian.com/blog/road-trip-utah-dever-missouri/", "published_at": "2015-07-02T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74d5b2c8e", "title": "Road Trip: Southern Utah", "url": "https://bsiranosian.com/blog/road-trip-southern-utah/", "published_at": "2015-07-01T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74e32c9a5", "title": "Road Trip: Turning back east", "url": "https://bsiranosian.com/blog/road-trip-turning-back-east/", "published_at": "2015-06-30T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74e3aafca", "title": "Road Trip: Santa Cruz, CA", "url": "https://bsiranosian.com/blog/road-trip-santa-cruz-ca/", "published_at": "2015-06-29T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74f3a9713", "title": "Road Trip: Santa Cruz to LA", "url": "https://bsiranosian.com/blog/road-trip-santa-cruz-to-la/", "published_at": "2015-06-29T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74f61637d", "title": "Road Trip: Yosemite National Park", "url": "https://bsiranosian.com/blog/road-trip-yosemite-national-park/", "published_at": "2015-06-29T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a74ff49a7a", "title": "Road Trip: California Coast", "url": "https://bsiranosian.com/blog/road-trip-california-coast/", "published_at": "2015-06-24T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a7501d20c5", "title": "Road Trip: Oregon", "url": "https://bsiranosian.com/blog/road-trip-oregon/", "published_at": "2015-06-24T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a750642a39", "title": "Road Trip: Seattle, Washington", "url": "https://bsiranosian.com/blog/road-trip-seattle-washington/", "published_at": "2015-06-21T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a751255dde", "title": "Road Trip: Grand Teton National Park", "url": "https://bsiranosian.com/blog/road-trip-grand-teton-national-park/", "published_at": "2015-06-07T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a751e93d01", "title": "Road Trip: Yellowstone National Park", "url": "https://bsiranosian.com/blog/road-trip-yellowstone-national-park/", "published_at": "2015-06-07T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a752af6857", "title": "Road Trip: Backcountry in the Badlands 2", "url": "https://bsiranosian.com/blog/road-trip-backcountry-in-the-badlands-2/", "published_at": "2015-06-06T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a752c07754", "title": "Road Trip: Backcountry in the Badlands", "url": "https://bsiranosian.com/blog/road-trip-backcountry-in-the-badlands/", "published_at": "2015-06-06T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a7538c1944", "title": "Road Trip: Badlands to Yellowstone + Devil's Tower", "url": "https://bsiranosian.com/blog/road-trip-badlands-to-yellowstone-devils-tower/", "published_at": "2015-06-06T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a75471f6fc", "title": "Road Trip: Michigan to the Badlands", "url": "https://bsiranosian.com/blog/road-trip-michigan-to-the-badlands/", "published_at": "2015-06-06T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a754b1cce0", "title": "Day 2: Rockwood, NY to Lake Orion, MI (and Niagara Falls)", "url": "https://bsiranosian.com/blog/day-2-rockwood-ny-to-lake-orion-mi-and-niagara-falls/", "published_at": "2015-05-31T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a755016347", "title": "Road Trip: Day 1", "url": "https://bsiranosian.com/blog/road-trip-day-1/", "published_at": "2015-05-31T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a755ab7bca", "title": "Start of a road trip", "url": "https://bsiranosian.com/blog/start-of-a-road-trip/", "published_at": "2015-05-29T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a7565344fc", "title": "What's in the portion of reads that don't map to a reference?", "url": "https://bsiranosian.com/blog/whats-in-the-portion-of-reads-that-dont-map-to-a-reference/", "published_at": "2014-07-30T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a757196b0b", "title": "Biotech and software companies at ISMB 2014", "url": "https://bsiranosian.com/blog/biotech-at-ismb-2014/", "published_at": "2014-07-21T00:00:00+00:00" }, { "id": "01a0875a-27e4-713b-aa84-54a757d47932", "title": "Highlights from ISMB - Day 3", "url": "https://bsiranosian.com/blog/highlights-from-ismb-day-3/", "published_at": "2014-07-15T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc66decaff2", "title": "Highlights from ISMB - Day 2", "url": "https://bsiranosian.com/blog/highlights-from-ismb-day-2/", "published_at": "2014-07-14T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc66e6c3d07", "title": "Highlights from ISMB - Day 1", "url": "https://bsiranosian.com/blog/highlights-from-ismb-day-1/", "published_at": "2014-07-13T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc66e7d43df", "title": "ISCB Student Council Symposium 2014", "url": "https://bsiranosian.com/blog/iscb-student-council-symposium-2014/", "published_at": "2014-07-11T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc66f0813c3", "title": "Thoughts from the SEA-PHAGES symposium", "url": "https://bsiranosian.com/blog/thoughts-from-the-sea-phages-symposium/", "published_at": "2014-06-15T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc670041295", "title": "SEA-PHAGES symposium 2014", "url": "https://bsiranosian.com/blog/sea-phages-symposium-2014/", "published_at": "2014-06-14T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc6703b89c8", "title": "Counting tetranucleotides in mycobacteriophages", "url": "https://bsiranosian.com/blog/counting-tetranucleotides-in-mycobacteriophages/", "published_at": "2014-06-10T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc670bd94aa", "title": "ISCB student council 2014", "url": "https://bsiranosian.com/blog/iscb-student-council-2014/", "published_at": "2014-05-17T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc671569287", "title": "Finished with junior year!", "url": "https://bsiranosian.com/blog/finished-with-junior-year/", "published_at": "2014-05-14T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc671e413b8", "title": "Blogs I follow", "url": "https://bsiranosian.com/blog/blogs-i-follow/", "published_at": "2014-05-11T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc6721a7522", "title": "Husband and wife start PhD after learning of disease", "url": "https://bsiranosian.com/blog/husband-and-wife-phd/", "published_at": "2014-05-05T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc672850728", "title": "Publishing code on GitHub", "url": "https://bsiranosian.com/blog/publishing-code-on-github/", "published_at": "2014-05-02T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc672a793fe", "title": "k-mers are everywhere!", "url": "https://bsiranosian.com/blog/k-mers-are-everywhere/", "published_at": "2014-04-24T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc67337141e", "title": "Academia or Industry?", "url": "https://bsiranosian.com/blog/academia-or-industry/", "published_at": "2014-04-17T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc67375b1a9", "title": "Books on Graduate School", "url": "https://bsiranosian.com/blog/books-on-graduate-school/", "published_at": "2014-04-11T00:00:00+00:00" }, { "id": "01a0875a-27e5-7150-a5b1-dbc67376e364", "title": "Brown Club of Boston Biotech Conference", "url": "https://bsiranosian.com/blog/brown-club-of-boston-biotech-conference/", "published_at": "2014-04-08T00:00:00+00:00" } ] posts Claim your blog
Back to bsiranosian.com
Blog · corpus.blog/blogs/bsiranosian.com/posts

bsiranosian.com

bsiranosian.com

2026

Deep learning statistical arbitrage part 1 - replicationoriginal ↗
29 Jun 2026
Revisiting VIX Call hedging - 2025 data update and new strategiesoriginal ↗
24 Jun 2026
Launching Radical Numericsoriginal ↗
15 Jun 2026

2025

Reducing RNA-seq batch effects by re-aligning TCGA and GTExoriginal ↗
11 Nov 2025
s3stasher simplifies using AWS S3 in pythonoriginal ↗
9 Nov 2025
Fixing a Milli-q purifier for 99% offoriginal ↗
5 Aug 2025
Does AMD 3D V-Cache help in bioinformatics?original ↗
26 May 2025
Tail risk hedging with VIX calls (Stanford MSE448 final)original ↗
25 May 2025

2023

Cross-account AWS FSx for Lustre and S3 data repository associationsoriginal ↗
6 Dec 2023
Introducing the ComputeBench: the cloud development environment for bioinformaticsoriginal ↗
21 Nov 2023
Accelerated computing is the future of genomicsoriginal ↗
10 Jan 2023

2022

Bioinformatics in the cloud, on a budgetoriginal ↗
22 Oct 2022
Getting a industry job after grad schooloriginal ↗
2 Oct 2022
Why are bioinformatics workflows different?original ↗
14 Aug 2022
Deploying redun to AWS Batch - troubleshootingoriginal ↗
5 Jul 2022
Trying out redun - the newest workflow manager on the blockoriginal ↗
5 Jul 2022
Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults (2)original ↗
2 Feb 2022
Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults (1)original ↗
1 Feb 2022

2021

Moving into aging research - in dogs!original ↗
1 Nov 2021
Tail risk hedging - replication of the VXTH indexoriginal ↗
12 Jan 2021
Volatility as an asset class - replication of Doran (2020) and extension to a leveraged risk-parity portfoliooriginal ↗
5 Jan 2021

2020

Large-scale bioinformatics in the cloud with GCP, Kubernetes and Snakemakeoriginal ↗
8 Jan 2020

2019

Transmission of crAsspahge in the microbiomeoriginal ↗
24 Jul 2019
What is crAssphage?original ↗
24 Jul 2019
Metagenome Assembled Genomes enhance short read classificationoriginal ↗
22 Jul 2019
Race report: China Peak Enduro 2019original ↗
2 Jul 2019
Short read classification with Kraken2original ↗
20 Jun 2019

2018

Genetic and transcriptional evolution alters cancer cell line drug responseoriginal ↗
9 Aug 2018
Joining the Bhatt laboriginal ↗
24 Jun 2018
Deep learning to understand and predict single-cell chromatin structureoriginal ↗
29 Mar 2018
Simulating 3D chromatin structure with molecular dynamics and loop extrusionoriginal ↗
25 Mar 2018
Is loop extrusion responsible for the 3D structure of the genome?original ↗
24 Mar 2018

2017

Down and up the California coastoriginal ↗
20 Oct 2017
Driving West and a Week in Tahoeoriginal ↗
19 Oct 2017
Jasper, Glacier, Eclipseoriginal ↗
17 Oct 2017
Bikepacking in Banfforiginal ↗
5 Oct 2017
Getting to know Banfforiginal ↗
4 Oct 2017
Moving to California, the long wayoriginal ↗
4 Oct 2017
Dublinoriginal ↗
4 Aug 2017
Cardifforiginal ↗
3 Aug 2017
From simit and kebabs to tea and crumpetsoriginal ↗
2 Aug 2017
Doseluna wineryoriginal ↗
31 Jul 2017
Assos day two - market dayoriginal ↗
30 Jul 2017
Arriving in Assosoriginal ↗
29 Jul 2017
Cycling around Büyükadaoriginal ↗
27 Jul 2017
Istanbul's Old Cityoriginal ↗
26 Jul 2017
Arriving in Istanbuloriginal ↗
24 Jul 2017
ISCB Student Council Symposium 2017original ↗
23 Jul 2017
Cesky Raj (Czech Bohemian Paradise)original ↗
20 Jul 2017
Summer travels start NOW!original ↗
16 Jul 2017
What's next: Stanford Genetics!original ↗
9 May 2017

2016

Vineyard 70.3 - 4th place!original ↗
12 Sept 2016
4 things I learned from keynote lectures at SCS2016original ↗
25 Jul 2016
How do you organize an international symposium?original ↗
20 Jul 2016
Use your computational skills to advance biomedical research and win cash by competing in the CMap Inference Challengeoriginal ↗
29 Jun 2016
Cotopaxi Questivaloriginal ↗
28 May 2016
Martha's Vineyard 70.3 triathlonoriginal ↗
4 Mar 2016

2015

Road Trip: Final Numbers and Thoughtsoriginal ↗
4 Jul 2015
Road Trip: Shenandoah NP to Boston, MAoriginal ↗
3 Jul 2015
Road Trip: Nashville to Atlantaoriginal ↗
2 Jul 2015
Road Trip: Utah, Dever, Missourioriginal ↗
2 Jul 2015
Road Trip: Southern Utahoriginal ↗
1 Jul 2015
Road Trip: Turning back eastoriginal ↗
30 Jun 2015
Road Trip: Santa Cruz, CAoriginal ↗
29 Jun 2015
Road Trip: Santa Cruz to LAoriginal ↗
29 Jun 2015
Road Trip: Yosemite National Parkoriginal ↗
29 Jun 2015
Road Trip: California Coastoriginal ↗
24 Jun 2015
Road Trip: Oregonoriginal ↗
24 Jun 2015
Road Trip: Seattle, Washingtonoriginal ↗
21 Jun 2015
Road Trip: Grand Teton National Parkoriginal ↗
7 Jun 2015
Road Trip: Yellowstone National Parkoriginal ↗
7 Jun 2015
Road Trip: Backcountry in the Badlands 2original ↗
6 Jun 2015
Road Trip: Backcountry in the Badlandsoriginal ↗
6 Jun 2015
Road Trip: Badlands to Yellowstone + Devil's Toweroriginal ↗
6 Jun 2015
Road Trip: Michigan to the Badlandsoriginal ↗
6 Jun 2015
Day 2: Rockwood, NY to Lake Orion, MI (and Niagara Falls)original ↗
31 May 2015
Road Trip: Day 1original ↗
31 May 2015
Start of a road triporiginal ↗
29 May 2015

2014

What's in the portion of reads that don't map to a reference?original ↗
30 Jul 2014
Biotech and software companies at ISMB 2014original ↗
21 Jul 2014
Highlights from ISMB - Day 3original ↗
15 Jul 2014
Highlights from ISMB - Day 2original ↗
14 Jul 2014
Highlights from ISMB - Day 1original ↗
13 Jul 2014
ISCB Student Council Symposium 2014original ↗
11 Jul 2014
Thoughts from the SEA-PHAGES symposiumoriginal ↗
15 Jun 2014
SEA-PHAGES symposium 2014original ↗
14 Jun 2014
Counting tetranucleotides in mycobacteriophagesoriginal ↗
10 Jun 2014
ISCB student council 2014original ↗
17 May 2014
Finished with junior year!original ↗
14 May 2014
Blogs I followoriginal ↗
11 May 2014
Husband and wife start PhD after learning of diseaseoriginal ↗
5 May 2014
Publishing code on GitHuboriginal ↗
2 May 2014
k-mers are everywhere!original ↗
24 Apr 2014
Academia or Industry?original ↗
17 Apr 2014
Books on Graduate Schooloriginal ↗
11 Apr 2014
Brown Club of Boston Biotech Conferenceoriginal ↗
8 Apr 2014