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"https://blog.khinsen.net/posts/2013/06/03/Bye-bye-Address-Book-welcome-BBDB.html", "published_at": "2013-06-03T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a90cf7a6e", "title": "A critical view of altmetrics", "url": "https://blog.khinsen.net/posts/2013/05/08/A-critical-view-of-altmetrics.html", "published_at": "2013-05-08T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a919d4461", "title": "Lessons from sixteen years of molecular simulation in Python", "url": "https://blog.khinsen.net/posts/2013/04/10/Lessons-from-sixteen-years-of-molecular-simulation-in-Python.html", "published_at": "2013-04-10T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a91a8fc22", "title": "Integrating scientific software and datasets into the citation record", "url": "https://blog.khinsen.net/posts/2012/11/14/Integrating-scientific-software-and-datasets-into-the-citation-record.html", "published_at": "2012-11-14T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a920edc7e", "title": "The ultimate calculator for Android and iOS", "url": "https://blog.khinsen.net/posts/2012/09/07/The-ultimate-calculator-for-Android-and-iOS.html", "published_at": "2012-09-07T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a92b8e5b9", "title": "The Nix package manager in computational science", "url": "https://blog.khinsen.net/posts/2012/05/14/The-Nix-package-manager-in-computational-science.html", "published_at": "2012-05-14T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a92dce2d7", "title": "Unifying version control and dependency management for reproducible research", "url": "https://blog.khinsen.net/posts/2012/04/10/Unifying-version-control-and-dependency-management-for-reproducible-research.html", "published_at": "2012-04-10T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a937a9d15", "title": "Julia: a new language for scientific computing", "url": "https://blog.khinsen.net/posts/2012/04/04/Julia-a-new-language-for-scientific-computing.html", "published_at": "2012-04-04T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a93a5a902", "title": "Binary operators in Python", "url": "https://blog.khinsen.net/posts/2012/03/29/Binary-operators-in-Python.html", "published_at": "2012-03-29T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a9466b1ec", "title": "Python becomes a platform", "url": "https://blog.khinsen.net/posts/2012/03/15/Python-becomes-a-platform.html", "published_at": "2012-03-15T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a94e3a624", "title": "Teaching parallel computing in Python", "url": "https://blog.khinsen.net/posts/2012/02/06/Teaching-parallel-computing-in-Python.html", "published_at": "2012-02-06T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a95cd1aa4", "title": "A rant about mail clients", "url": "https://blog.khinsen.net/posts/2011/11/04/A-rant-about-mail-clients.html", "published_at": "2011-11-04T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a95e9aec7", "title": "EuroSciPy 2011", "url": "https://blog.khinsen.net/posts/2011/08/30/EuroSciPy-2011.html", "published_at": "2011-08-30T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a961e98c3", "title": "Executable Papers", "url": "https://blog.khinsen.net/posts/2011/06/03/Executable-Papers.html", "published_at": "2011-06-03T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a9625a3ca", "title": "Text input on mobile devices", "url": "https://blog.khinsen.net/posts/2011/05/02/Text-input-on-mobile-devices.html", "published_at": "2011-05-02T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a96b5ad9a", "title": "Bye bye iCal, welcome org-mode", "url": "https://blog.khinsen.net/posts/2011/01/04/Bye-bye-iCal-welcome-org-mode.html", "published_at": "2011-01-04T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a9754f922", "title": "The future of Python", "url": "https://blog.khinsen.net/posts/2010/07/19/The-future-of-Python.html", "published_at": "2010-07-19T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a98467b2a", "title": "EuroSciPy 2010", "url": "https://blog.khinsen.net/posts/2010/07/12/EuroSciPy-2010.html", "published_at": "2010-07-12T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a99335314", "title": "Science and free will", "url": "https://blog.khinsen.net/posts/2010/07/01/Science-and-free-will.html", "published_at": "2010-07-01T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a99aade52", "title": "Eclipse experiences", "url": "https://blog.khinsen.net/posts/2010/01/19/Eclipse-experiences.html", "published_at": "2010-01-19T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a9a421038", "title": "Scientific computing needs deterministic programming paradigms", "url": "https://blog.khinsen.net/posts/2009/09/09/Scientific-computing-needs-deterministic-programming-paradigms.html", "published_at": "2009-09-09T00:00:00+00:00" }, { "id": "01a0874d-21e3-71df-bf45-4f6a9ad4881f", "title": "Sheldrake's New Science of Life", "url": "https://blog.khinsen.net/posts/2009/08/25/Sheldrakes-New-Science-of-Life.html", "published_at": "2009-08-25T00:00:00+00:00" }, { "id": "01a0874d-21e4-7324-8f64-c992b63b8c28", "title": "Functional programming for scientific computing", "url": "https://blog.khinsen.net/posts/2009/06/23/Functional-programming-for-scientific-computing.html", "published_at": "2009-06-23T00:00:00+00:00" }, { "id": "01a0874d-21e4-7324-8f64-c992b679f503", "title": "Static typing and code clutter", "url": "https://blog.khinsen.net/posts/2009/05/12/Static-typing-and-code-clutter.html", "published_at": "2009-05-12T00:00:00+00:00" }, { "id": "01a0874d-21e4-7324-8f64-c992b773c87a", "title": "Monads in Clojure", "url": "https://blog.khinsen.net/posts/2009/04/22/Monads-in-Clojure.html", "published_at": "2009-04-22T00:00:00+00:00" } ] posts Claim your blog

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2026

Knowledge refinement in the digital era original ↗

25 Sept 2026

Conviviality in computational science original ↗

6 Jul 2026

Cultures of making and relating original ↗

25 Jun 2026

Automating science original ↗

19 May 2026

Preparing for scientific deepfakes original ↗

6 Mar 2026

2025

Explorable explorable explanations original ↗

12 Nov 2025

Explaining software and computational methods original ↗

25 Jun 2025

Why computational reproducibility matters original ↗

20 Jun 2025

Why we should review research software original ↗

11 Apr 2025

Going for robustness: science original ↗

27 Mar 2025

Going for robustness original ↗

5 Mar 2025

2024

Modular malleability original ↗

16 Oct 2024

2023

The low-hanging fruit in computational reproducibility original ↗

30 Nov 2023

This blog gets a facelift original ↗

16 Nov 2023

Following branching conversations on Mastodon original ↗

5 Nov 2023

Deconstructing the Mastodon client original ↗

9 Oct 2023

2022

Welcome to my digital garden!original ↗

31 Aug 2022

2021

The dependency hubs in Open Source software original ↗

10 Jun 2021

The structure and interpretation of scientific models, part 2 original ↗

8 Jan 2021

2020

The structure and interpretation of scientific models original ↗

10 Dec 2020

Some comments on AlphaFold original ↗

2 Dec 2020

The four possibilities of reproducible scientific computations original ↗

20 Nov 2020

The landscapes of digital scientific knowledge original ↗

8 Jul 2020

An open letter to software engineers criticizing Neil Ferguson's epidemics simulation code original ↗

18 May 2020

Wanted: a hierarchically modular software architecture original ↗

5 May 2020

Emacs as a malleable system original ↗

3 Apr 2020

The rise of community-owned monopolies original ↗

26 Feb 2020

2019

Pharo year one original ↗

31 Dec 2019

Industrialization of scientific software: a case study original ↗

12 Nov 2019

The industrialization of scientific research original ↗

29 Oct 2019

The computational notebook of the future (part 2)original ↗

9 May 2019

Is reproducibility good for scientific progress? (a paper review)original ↗

23 Apr 2019

The computational notebook of the future original ↗

11 Feb 2019

2018

Exploring Pharo original ↗

19 Dec 2018

Knowledge distillation in computer-aided research original ↗

21 Oct 2018

Literate computational science original ↗

26 Jul 2018

Scientific software is different from lab equipment original ↗

7 May 2018

Scientific communication is a research problem original ↗

9 Apr 2018

What can we do to check scientific computation more effectively?original ↗

7 Mar 2018

2017

Data science in ancient Greece original ↗

19 Dec 2017

Stability in the SciPy ecosystem: a summary of the discussion original ↗

22 Nov 2017

A plea for stability in the SciPy ecosystem original ↗

16 Nov 2017

There is no such thing as software development original ↗

9 Nov 2017

Why Python does so well in scientific computing original ↗

12 Sept 2017

Which mistakes do we actually make in scientific code?original ↗

4 May 2017

Reproducible research in the Python ecosystem: a reality check original ↗

6 Apr 2017

Reproducibility does not imply reproduction original ↗

24 Jan 2017

Sustainable software and reproducible research: dealing with software collapse original ↗

13 Jan 2017

2016

From reproducible to verifiable computer-aided research original ↗

11 May 2016

Composition is the root of all evil original ↗

4 Mar 2016

On HDF5 and the future of data management original ↗

7 Jan 2016

2015

From facts to narratives original ↗

8 Dec 2015

This blog is moving!original ↗

12 Nov 2015

The lifecycle of digital scientific knowledge original ↗

9 Nov 2015

A rant about software deployment in 2015 original ↗

6 Nov 2015

Beyond Jupyter: what's in a notebook?original ↗

3 Sept 2015

The future of the Scientific Python ecosystem original ↗

16 Jul 2015

Another look at Julia original ↗

18 Jun 2015

The compartmentalization of knowledge original ↗

5 Jun 2015

Software in scientific research original ↗

23 Apr 2015

Why bitwise reproducibility matters original ↗

7 Jan 2015

2014

Drawing conclusions from empirical science original ↗

29 Dec 2014

The state of NumPy original ↗

12 Sept 2014

Reproducibility, replicability, and the two layers of computational science original ↗

27 Aug 2014

A first experience with Open Access publishing original ↗

4 Jul 2014

Exploring Racket original ↗

10 May 2014

The roles of computer programs in science original ↗

21 Jan 2014

2013

Python as a platform for reproducible research original ↗

19 Nov 2013

ActivePapers for Python original ↗

27 Sept 2013

Platforms for reproducible research original ↗

14 Aug 2013

Bye bye Address Book, welcome BBDB original ↗

3 Jun 2013

A critical view of altmetrics original ↗

8 May 2013

Lessons from sixteen years of molecular simulation in Python original ↗

10 Apr 2013

2012

Integrating scientific software and datasets into the citation record original ↗

14 Nov 2012

The ultimate calculator for Android and iOS original ↗

7 Sept 2012

The Nix package manager in computational science original ↗

14 May 2012

Unifying version control and dependency management for reproducible research original ↗

10 Apr 2012

Julia: a new language for scientific computing original ↗

4 Apr 2012

Binary operators in Python original ↗

29 Mar 2012

Python becomes a platform original ↗

15 Mar 2012

Teaching parallel computing in Python original ↗

6 Feb 2012

2011

A rant about mail clients original ↗

4 Nov 2011

EuroSciPy 2011 original ↗

30 Aug 2011

Executable Papers original ↗

3 Jun 2011

Text input on mobile devices original ↗

2 May 2011

Bye bye iCal, welcome org-mode original ↗

4 Jan 2011

2010

The future of Python original ↗

19 Jul 2010

EuroSciPy 2010 original ↗

12 Jul 2010

Science and free will original ↗

1 Jul 2010

Eclipse experiences original ↗

19 Jan 2010

2009

Scientific computing needs deterministic programming paradigms original ↗

9 Sept 2009

Sheldrake's New Science of Life original ↗

25 Aug 2009

Functional programming for scientific computing original ↗

23 Jun 2009

Static typing and code clutter original ↗

12 May 2009

Monads in Clojure original ↗

22 Apr 2009